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Suggested Readings
Basic concepts
Broad reviews
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Comparison of resources
Intuitive browsing
Multi-level categories
Alphabetical list
Intuitive browsing for bioinformatics resources
DNA
RNA
Proteins
Other molecules
Disease
Structure
Data analysis
Techniques
Literature
Species
Branch/field
DNA
Genes
Gene ID conversion
Gene ontology
Gene/protein information
Disease-gene relationships
Gene information from Splicing
Genetics
Genomes
Interactions
Protein-nucleic acid
Chip-seq analysis
Motifs
DNA motif detection
Transcription factor binding sites
Microarray
Microarray data analysis
Microarray probes
Microarray gene expression data
NGS
Orthologs
Orthologs
Protein interactions using orthologs
Primers/probes
Primer Designing
Probe set details for splice forms
Gene ID conversion
Promoter
Promoter prediction
DNA motif detection
Transcription factor binding sites
Phylogeny
Phylogeny/Taxonomy
Primers for phylogenetic analysis
Orthologs
Splicing
Sequence alignment
SNP
SNP resources
SNP discovery using NGS
SNP primer
Structure
TFBS
Taxonomy
Phylogeny/Taxonomy
Nomenclature
RNA
Gene expression
Interactions
Protein-nucleic acid
Long non-coding RNA
Microarray
Microarray data analysis
Microarray probes
Microarray gene expression data
miRNA
NGS
piRNA
Primers/probes
Splicing
Alternative splice forms
Predict spliced miRNAs
Sequence alignment
Multiple sequence alignment
RNA seq alignment
Structure
RNA structure prediction
DNA/RNA structures
miRNA secondary structure
PROTEINS
Antibodies
Biomarkers
Disease relationships
Enzymes
Functional analysis
Pathways
Functional analysis
Gene Ontology analysis
Protein-protein interactions
ID conversion
Information
Interactions
Protein-protein
(categorised list of ~50 DBs)
Protein-protein
(list of ~374 DBs)
Protein-nucleic acid
Localization
Mass spectrometry
Secretome
Structure
Protein domains
Protein structure prediction
Molecular docking
Sequence alignment
Transcription factors
OTHER MOLECULES
Carbohydrates
Lipids
Small molecules
DISEASE
Disease-gene relationships
miRNA
Disease/tissue specific
Pathways
Disease specific
(listed among general pathways)
Cancer
(listed among general pathways)
Protein-protein interactions
Disease specific
Cancer specific
STRUCTURE
DNA/RNA structures
Docking
Domains
Protein domains
Domains by protein structure prediction
miRNA
Structure prediction
Protein structure
RNA structure
DATA ANALYSIS
Functional analysis
Functional analysis
Pathways
Protein-protein interactions
Gene Ontology analysis
Gene Ontology analysis
Microarray data analysis
miRNA analysis
NGS
Spectral analysis
TECHNIQUES
EST
Microarray
Microarray data analysis
Microarray gene expression data
NGS
SAGE
LITERATURE
Text mining
Literature Search
SPECIES
Arabidopsis
Pathways
Splicing
Chicken
miRNA
Splicing
Cow
Splicing
Dog
Splicing
Fly
miRNA
Pathways
Splicing
Human
miRNA
Gene expression
Pathways
Viral-human protein interactions
Splicing
Microbes
Microbiology
Pathways
(listed among general pathways)
Protein-protein interactions
Mouse
miRNA
Gene expression
Pathways
Splicing
Pathogens
Pathways
Plants
miRNA
Gene expression
Pathways
Protein-protein interactions
Rat
miRNA
Gene expression
Pathways
Splicing
Virus
miRNA
Pathways
Protein-protein interactions
HIV
Viral-host
Viral-human
Worm
miRNA
Pathways
Yeast
Pathways
Zebrafish
miRNA
Splicing
BRANCH/FIELD
Medical Research
Clinical trials
Cell lines
Microbiology
Microbiology
Pathways specific to bacteria
(listed among general pathways)
Interactions specific to microbes
Pharmacokinetics and Pharmacodynamics
Others
Organelles
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copyright © Dr. Kshitish Acharya K; all rights reserved