| AtPID - Arabidopsis thaliana Protein Interactome Databasehttp://www.megabionet.org/atpid |
| A database of interactions in plant proteins (Arabidopsis thaliana). Provides predicted interactions based on gene expression, genomic data, Gene Ontology terms, orthology. Provides domain interactions. Provides functional associations for the interactions. |
| | Cui J, Li P, Li G, Xu F, Zhao C, Li Y, Yang Z, Wang G, Yu Q, Li Y, Shi T. AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology. Nucleic Acids Res. 2008 Jan;36(Database issue):D999-1008. Epub 2007 Oct 25. PubMed PMID: 17962307; PubMed Central PMCID: PMC2238993. |
| 2007 | 100 |
URL could not be retrieved (20/12/2011). |
| MitoInteractome - Mitochondrial Protein Interactome Databasehttp://mitointeractome.kobic.kr |
| A resource specific to mitochondrial PPIs. Predicts interactions based on the domain/interfaces/sites. Provides inferred interactions (e.g., human interactions inferred from mouse & rat). |
| | Reja R, Venkatakrishnan AJ, Lee J, Kim BC, Ryu JW, Gong S, Bhak J, Park D. MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis. BMC Genomics. 2009 Dec 3;10 Suppl 3:S20. PubMed PMID: 19958484; PubMed Central PMCID: PMC2788373. |
| 2009 | 100 |
|
| MPIDB - Microbial Protein Interaction DataBasehttp://www.jcvi.org/mpidb |
| A database specific to bacterial PPIs. Gets similar protein interactions among species. |
| | Goll J, Rajagopala SV, Shiau SC, Wu H, Lamb BT, Uetz P. MPIDB: the microbial protein interaction database. Bioinformatics. 2008 Aug 1;24(15):1743-4. Epub 2008 Jun 13. PubMed PMID: 18556668; PubMed Central PMCID: PMC2638870. |
| 2008 | 100 |
|
| PIPs - Human Protein-Protein Interaction Predictionhttp://www.compbio.dundee.ac.uk/www-pips |
| A database specific to human PPIs. Predicts interaction based on co-expression, domain/interfaces/sites, co-localization and co-occurrence of PTMs. |
| | McDowall MD, Scott MS, Barton GJ. PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. 2009 Jan;37(Database issue):D651-6. Epub 2008 Nov 6. PubMed PMID: 18988626; PubMed Central PMCID: PMC2686497. |
| 2008 | 100 |
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