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Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
Simple lists
Carbohydrates
Gene ID conversion
Lipids
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Mass spectrometry
Microarray data analysis
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and toxicology
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Transcription factors and binding sites
Suggested Readings
Basic concepts
Broad reviews
Other reviews
Case studies
Comparison of resources
Intuitive browsing
Multi-level categories
Alphabetical list
Created on: 02-May-2011
Last updated on: 06-Aug-2012
How to cite this?
A compilation and categorization of DNA motif detection resources
Sudhakana Saha and Vinod Kumar H.S (Correspondence: Acharya KK, kshitish@ibab.ac.in)
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Motif detection by over-representative count (UNKNOWN)
Motif detection by gapped motif prediction (UNKNOWN)
Motif detection by conservative mode (UNKNOWN)
Motif detection by pattern/matrix input (KNOWN)
Motif detection by Background file (KNOWN)
Motif detection by user-defined motifs (KNOWN)
Motif detection by promoter/TSS mode (KNOWN)
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Please use the following to cite:
"Sudhakana Saha and Vinod Kumar H.S (Correspondence: Acharya KK, kshitish@ibab.ac.in), A compilation and categorization of DNA motif detection resources; In: Startbioinfo; 02 May 2011, /DNAmotifs/"
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copyright © Dr. Kshitish Acharya K; all rights reserved
