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Suggested Readings

Categorized lists of bioinformatics resources

(based on our simple or detailed surveys, or systematic comparative analysis)

Post-analysis categorization

Literature search [53]

Post-survey categorization

- Features validated in most cases

Gene expression (commonly used resources) [40]

MicroRNA [274]

Pathways [185]

Primer designing [89]

Protein-protein interactions (commonly used resources) [50]

Protein structure prediction [148]

SNP analysis [356]

- Features not validated

Alternative splice form analysis [118]

DNA motif detection [83]

Microbiology [168]

Multiple sequence alignment [87]

Next generation sequencing [389]

Simple lists

Carbohydrates [17]
Gene ID conversion [16]
Lipids [11]
Long non-coding RNA [26]
piRNA [10]
Promoter prediction [105]
Protein-protein interactions (all resources) [375]
RNA structure prediction [20]
SNP analysis [265]

Preliminary lists

Antibodies [48]
Biomarkers [6]
Cell lines [9]
Clinical trials [31]
Disease-gene relationships [16]
DNA/RNA structures [52]
Enzymes [13]
Functional analysis [153]
Gene expression (all resources) [288]
Gene Ontology specific analysis [11]
Gene/protein unified information [21]
Genetics [25]
Genomes and Genomics [107]
Mass spectrometry [5]
Microarray data analysis [158]
Molecular docking [54]
Nomenclature [16]
Organelles [22]
Orthologs [36]
Pharmacokinetics and Pharmacodynamics [69]
Phylogeny/Taxonomy [21]
Protein domains [25]
Protein localization [37]
Protein-nucleic acid interactions [45]
Secretome [9]
Small molecules [51]
Spectral analysis [32]
Text-mining [24]
Toxicology [44]
Transcription factors and binding sites [30]

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