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Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
SNP analysis
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
Simple lists
Carbohydrates
Gene ID conversion
Lipids
Long non-coding RNA
piRNA
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Mass spectrometry
Microarray data analysis
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and Pharmacodynamics
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Toxicology
Transcription factors and binding sites
Suggested Readings
Basic concepts
Broad reviews
Other reviews
Case studies
Comparison of resources
Intuitive browsing
Multi-level categories
Alphabetical list
Created on: 17-Dec-2011
Last updated on: 04-Feb-2012
How to cite this?
A comparative account of pathways resources, feature-validations and application-based categorizations
Sravanthi Davuluri, Akhilesh Bajpai, Deepa S and Acharya KK* (*Correspondence: kshitish@ibab.ac.in)
Select an application area
Pathways in mammals
Pathways in model organisms
Pathways in humans
Pathways in mice
Pathways in rats
Pathways in drosophila
Pathways in yeast
Pathways in bacteria
Pathways in E. coli
Pathways in virus
Pathways in pathogens
Pathways in C. elegans
Pathways in plants
Pathways in Arabidopsis
Signaling pathways
Metabolic pathways
Regulatory pathways
Pathways for a specific disease
Pathways for a given gene/protein
Pathways for a given set of genes/proteins
Pathways among a given set of genes/proteins
Pathways along with PPIs, for a given set of proteins
Browse pathways
Pathways inferred from model organisms
Pathways with GO terms
Pathway comparisons
Pathway conservation
Pathways with their evolutionary relationships
Pathways collected from multiple pathway resources
Cell component specific (e.g., nucleus) pathways
Pathways along with their sub-cellular localization
Pathways related to immune system
Pathways related to cancer
Graphical representation of pathways
Build pathways
Edit pathways
Upload or submit your pathway data
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Please use the following to cite:
"Sravanthi Davuluri, Akhilesh Bajpai and Acharya KK* (*Correspondence: kshitish@ibab.ac.in), A comparative account of pathways resources, feature-validations and application-based categorizations; In: Startbioinfo; 17 Dec 2011, /pathways/"
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copyright © Dr. Kshitish Acharya K; all rights reserved
