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Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
SNP analysis
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
Simple lists
Carbohydrates
Gene ID conversion
Lipids
Long non-coding RNA
piRNA
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Mass spectrometry
Microarray data analysis
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and toxicology
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Toxicology
Transcription factors and binding sites
Intuitive browsing
Multi-level categories
Alphabetical list
Recommended catalogs/directories
Bioinformatics Links Directory:
Covers more number of resources with good categorization, user-friendly along with useful information for each tool.
http://www.bioinformatics.ca/links_directory/
NAR Database Category List:
Covers good number of resources with good categorization, user-friendly, and updated yearly.
http://www.oxfordjournals.org/nar/database/c/
BioCatalogue:
Covers high number of resources with good categorization, with a few additional features.
http://www.biocatalogue.org/
Online Bioinformatics Resources Collection:
Covers high number of resources with moderate categorization, user-friendly with a few additional features.
http://www.hsls.pitt.edu/obrc/
Integbio Database Catalog:
Covers moderate number of resources with moderate categorization, user-friendly with a few additional features.
http://integbio.jp/dbcatalog/?lang=en
Other catalogs/directories
Database of Biological Database:
http://www.biodbs.info/Dm.html
Bioinformatics Resources:
http://anil.cchmc.org/BioInfoRes.html
Bioinformatics Databases and Tools Guide:
http://www.biw.kuleuven.be/vakken/i287/bioinformatica.htm
Biology Databases:
http://www.bcmsu.ac.in/BDBASE.HTM
Wiki-List of Biological databases:
http://en.wikipedia.org/wiki/List_of_biological_databases
Bioinformatics Web:
http://bioinformaticsweb.net/
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Based on a survey done in December 2011
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