| 1 |
geoRgehttps://github.com/jcapelladesto/geoRge. |
A Computational Tool To Detect the Presence of Stable Isotope Labeling in LC/MS-Based Untargeted Metabolomics | Capellades J, Navarro M, Samino , Garcia-Ramirez M, Hernandez C, Simo R, Vinaixa M, Yanes O;geoRge: A Computational Tool To Detect the Presence of Stable Isotope Labeling in LC/MS-Based Untargeted Metabolomics.Anal Chem. 2016 Jan 5;88(1):621-8. doi: 10.1021/acs.analchem.5b03628. Epub 2015 Dec 18.PMID: 26639619
| 2016 | 1 |
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| 2 |
CAZyhttp://www.cazy.org |
Provides details about the Carbohydrate-Active enZYmes. | Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 2009 Jan;37(Database issue):D233-8. doi: 10.1093/nar/gkn663. Epub 2008 Oct 5. PubMed PMID: 18838391; PubMed Central PMCID: PMC2686590.
| 2008 | 32 |
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| 3 |
CFG Functional Glycomics gatewayhttp://www.functionalglycomics.org |
Provides access to primary experimental data like that from glycan microarray screen. | | Not available | 84 |
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| 4 |
GBP - Glycan Binding Proteinshttp://www.functionalglycomics.org/glycomics/molecule/jsp/gbpMolecule-home.jsp |
Provides the information about the glycan binding proteins. | | Not available | 94 |
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| 5 |
CSDB http://csdb.glycoscience.ru. |
Carbohydrate Structure Database. | K.S. Egorova, A.N. Kondakova, and Ph.V. Toukach; Carbohydrate Structure Database: tools for statistical analysis of bacterial, plant and fungal glycomes; Database (Oxford). 2015 Sep 3; doi: 10.1093/database/bav073 ;PMID: 26337239 PMCID: PMC4559136..
| 2015 | 94 |
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| 6 |
BCSDB - Bacterial carbohydrate structure databasehttp://csdb.glycoscience.ru/bacterial |
Provides detailed carbohydrate structural information that is derived from many bacterial species. | Toukach PV. Bacterial carbohydrate structure database 3: principles andrealization. J Chem Inf Model. 2011 Jan 24;51(1):159-70. doi: 10.1021/ci100150d. Epub 2010 Dec 14. PubMed PMID: 21155523.
| 2011 | 96 |
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| 7 |
dbCAN - Carbohydrate-active enzymeshttp://csbl.bmb.uga.edu/dbCAN/annotate.php |
Provides signature domain annotation information for CAZyme (carbohydrate-active enzyme) families. | Yin Y, Mao X, Yang J, Chen X, Mao F, Xu Y. dbCAN: a web resource for automatedcarbohydrate-active enzyme annotation. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W445-51. doi: 10.1093/nar/gks479. Epub 2012 May 29. PubMed PMID: 22645317;PubMed Central PMCID: PMC3394287.
| 2012 | 98 |
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| 8 |
GLYCO3Dhttp://glyco3d.cermav.cnrs.fr/ |
Provides the integration of few databases (BiOligo, Lectin3D, GAG, mAbs, GT, Polysac3DB) and relevant information. | | Not available | 98 |
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| 9 |
GLYCOSCIENCES.dehttp://www.glycosciences.de/. |
Provides details about glycobiology and glycomics. | Lütteke T, Bohne-Lang A, Loss A, Goetz T, Frank M, von der Lieth CW.GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiologyresearch. Glycobiology. 2006 May;16(5):71R-81R. Epub 2005 Oct 20. Review. PubMed PMID: 16239495.
| 2006 | 98 |
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| 10 |
MatrixDBhttp://matrixdb.ibcp.fr/ |
Provides information about protein-protein and protein-carbohydrate interactions. | Chautard E, Ballut L, Thierry-Mieg N, Ricard-Blum S. MatrixDB, a databasefocused on extracellular protein-protein and protein-carbohydrate interactions.Bioinformatics. 2009 Mar 1;25(5):690-1. doi: 10.1093/bioinformatics/btp025. Epub 2009 Jan 15. PubMed PMID: 19147664; PubMed Central PMCID: PMC2647840.
| 2009 | 98 |
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| 11 |
UniCarbKBhttp://www.unicarbkb.org/ |
This database provides information about mammalian glycobiology. | Matthew P. Campbell, , Nicolle H. Packer; UniCarbKB: New database features for integrating glycan structure abundance, compositional glycoproteomics data, and disease associations.Biochim Biophys Acta. 2016 Aug;1860(8):1669-75. doi: 10.1016/j.bbagen.2016.02.016. Epub 2016 Mar 3;PMID: 26940363
| 2016 | 99 |
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| 12 |
3D Lectine Databasehttp://lectin3d.cermav.cnrs.fr |
Provides information about lectins from different species. | | Not available | 100 |
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| 13 |
3DSDSCAR - Three dimensional structural database for sialic acid-containing carbohydrateshttp://www.3dsdscar.org./ |
Provides information about 3D structural database for sialic acid-containing carbohydrates (3DSDSCAR). | Veluraja K, Selvin JF, Venkateshwari S, Priyadarzini TR. 3DSDSCAR--a threedimensional structural database for sialic acid-containing carbohydrates through molecular dynamics simulation. Carbohydr Res. 2010 Sep 23;345(14):2030-7. doi:10.1016/j.carres.2010.06.021. Epub 2010 Jul 8. PubMed PMID: 20691432.
| 2010 | 100 |
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| 14 |
BPGDhttp://sydney.edu.au/science/molecular_bioscience/BPGD |
Database describes about bacterial polysaccharide genes. | | Not available | 100 |
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| 15 |
EuroCarbDBhttp://www.ebi.ac.uk/eurocarb/home.action |
Database with structures of carbohydrates and experimental data. It provides details about unique taxonomies, tissues, diseases, perturbations and 0-glycoconjugates. | von der Lieth CW, Freire AA, Blank D, Campbell MP, Ceroni A, Damerell DR, DellA, Dwek RA, Ernst B, Fogh R, Frank M, Geyer H, Geyer R, Harrison MJ, Henrick K,Herget S, Hull WE, Ionides J, Joshi HJ, Kamerling JP, Leeflang BR, Lütteke T,Lundborg M, Maass K, Merry A, Ranzinger R, Rosen J, Royle L, Rudd PM, SchloissnigS, Stenutz R, Vranken WF, Widmalm G, Haslam SM. EUROCarbDB: An open-accessplatform for glycoinformatics. Glycobiology. 2011 Apr;21(4):493-502. doi:10.1093/glycob/cwq188. Epub 2010 Nov 23. PubMed PMID: 21106561; PubMed CentralPMCID: PMC3055595.
| 2010 | 100 |
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| 16 |
GlycomeDBhttp://www.glycome-db.org/ |
Provides the structural information for 11,822 carbohydrates. | Ranzinger R, Herget S, von der Lieth CW, Frank M. GlycomeDB - a unifieddatabase for carbohydrate structures. Nucleic Acids Res. 2011 Jan;39(Databaseissue):D373-6. doi: 10.1093/nar/gkq1014. Epub 2010 Nov 2. PubMed PMID: 21045056; PubMed Central PMCID: PMC3013643.
| 2010 | 100 |
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| 17 |
KEGG GLYCANhttp://www.genome.jp/kegg/glycan |
Database provides the information about molecular interaction networks as well as glycan biosynthesis and metabolism. | Hashimoto K, Goto S, Kawano S, Aoki-Kinoshita KF, Ueda N, Hamajima M, KawasakiT, Kanehisa M. KEGG as a glycome informatics resource. Glycobiology. 2006May;16(5):63R-70R. Epub 2005 Jul 13. Review. PubMed PMID: 16014746.
| 2006 | 100 |
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| 18 |
Mucin Databasehttp://www.medkem.gu.se/mucinbiology/databases |
Provides details about mucin genes, transcripts, protein sequences and functional domains. | Lang T, Hansson GC, Samuelsson T. Gel-forming mucins appeared early inmetazoan evolution. Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16209-14. Epub2007 Oct 2. PubMed PMID: 17911254; PubMed Central PMCID: PMC2042186.
| 2007 | 100 |
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| 19 |
O-GlycBasehttp://www.cbs.dtu.dk/databases/OGLYCBASE |
Provides details about glycoproteins as well as O-linked glycosylation sites. | Gupta R, Birch H, Rapacki K, Brunak S, Hansen JE. O-GLYCBASE version 4.0: arevised database of O-glycosylated proteins. Nucleic Acids Res. 1999 Jan1;27(1):370-2. PubMed PMID: 9847232; PubMed Central PMCID: PMC148187.
| 1999 | 100 |
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| 20 |
PROCARBhttp://www.procarb.org |
Provides information about protein-carbohydrate complexes. | Malik A, Firoz A, Jha V, Ahmad S. PROCARB: A Database of Known and ModelledCarbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools. AdvBioinformatics. 2010:436036. doi: 10.1155/2010/436036. Epub 2010 Jun 29. PubMedPMID: 20671979; PubMed Central PMCID: PMC2909730.
| 2010 | 100 |
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| 21 |
CSDB_GThttp://csdb.glycoscience.ru/gt.html. |
Carbohydrate Structure Glycosyltransferase Database is a new database that provides 780 activities that are exhibited by Glycosyltransferases as well as several others that are found in Arabidopsis thaliana. It is linked to o the Carbohydrate Structure Database (CSDB) | Ksenia S Egorova Philip V Toukach.CSDB_GT: a new curated database on glycosyltransferases. Glycobiology (2017) 27 (4): 285-290;03 January 2017; https://doi.org/10.1093/glycob/cww137; PMID: 28011601
| 2017 | 100 |
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| 22 |
FOODPRO |
it is a web based tool that inlcudes a food NMR spectrum database and evaluates covariance and correlation
spectra to tasting and hardness[ roughly catagorized into fish and vegetable group | Chikayama E, Yamashina R, Komatsu K, Tsuboi Y, Sakata K, Kikuchi J, Sekiyama Y..FoodPro: A Web-Based Tool for Evaluating Covariance and Correlation NMR Spectra Associated with Food Processes. Metabolites. 2016 Oct 19;6(4). pii: E36. DOI: 10.3390/metabo6040036; PMID: 27775560 PMCID: PMC5192442
| 2016 | 100 |
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| 23 |
CarbBuilderhttps://people.cs.uct.ac.za/~mkuttel/Downloads.html |
CarbBuilder is a portable software tool capable of producing 3D molecular models of carbohydrates from the simple text specification of a primary structure. It can generate a wide variety of carbohydrate structures, ranging from monosaccharides to large, branched polysaccharides. Freely available | Michelle M. Kuttel, Jonas Stĺhle,Göran Widmalm.CarbBuilder: Software for building molecular models of complex oligo- and polysaccharide structures.J Comput Chem. 2016 Aug 15;37(22):2098-105. doi: 10.1002/jcc.24428. Epub 2016 Jun 18. PMID: 27317625
| 2016 | 100 |
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| 24 |
UniCornhttps://github.com/haifengl/unicorn |
A theoretical N-glycan structure database. Provides information about experimentally described glycan structures | Akune Y, Lin CH, Abrahams JL, Zhang J, Packer NH, Aoki-Kinoshita KF, Campbell MP.Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database.Carbohydr Res. 2016 Aug 5;431:56-63. doi: 10.1016/j.carres.2016.05.012. Epub 2016 May 30;PMID: 27318307
| 2016 | 100 |
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| 25 |
PlantCAZymehttp://cys.bios.niu.edu/plantcazyme/ |
A database of carbohydrate active enzymes (CAZymes) for plant carbohydrates | Alexander Ekstrom, Rahil Taujale, Nathan McGinn1 and Yanbin Yin.PlantCAZyme: a database for plant
carbohydrate-active enzymes,Database (Oxford). 2014 Aug 14,1–8,DOI: 10.1093/database/bau079,PMID: 25125445 PMCID: PMC4132414
| 2014 | 100 |
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| 26 |
Privateerhttp://www.ccp4.ac.uk/html/privateer.html |
It is a software package aimed at the conformational validation of carbohydrate structures | Jon Agirre, Javier Iglesias-Fernández, Carme Rovira, Gideon J Davies, Keith S Wilson & Kevin D Cowtan.Privateer: software for the conformational validation of carbohydrate structures;Nature Structural & Molecular Biology 22, 833–834,2015 November 04 doi:10.1038/nsmb.3115.PMID: 26581513
| 2015 | 100 |
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| 27 |
GlycoCDhttp://glycosciences.de/glycocd/index.php |
This database provides information about carbohydrate moieties and proteins interactions. | Sonu Kumar Thomas Lütteke Reinhard Schwartz-Albiez;GlycoCD: a repository for carbohydrate-related CD antigens; Bioinformatics. 2012 Oct 1;28(19):2553-5. Epub 2012 Jul 30, PMID: 22847935
| 2012 | 100 |
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