| 1 |
RNAdb 2.0http://research.imb.uq.edu.au/rnadb/ |
Sequences of dirfferent pirna can be downloaded | Pang, KC, Stephen, S, Dinger, ME, Engstrom, PG, Lenhard, B, Mattick, JS (2007).RNAdb 2.0--an expanded database of mammalian non-coding RNA.Nucleic Acids Res 35: D178-182. PMCID: PMC1751534.PMID:17145715
| 2007 | 10 |
|
| 2 |
piRNABankhttp://pirnabank.ibab.ac.in/ |
It compiles all the possible piRNA clusters and gives the information of piRNA information for the gene and also for the genomic repeat elements | p i R N A B a n k : a w e b r e s o u r c e o n c l a s s i f i e d a n d c l u s t e r e d P i w i - i n t e r a c t i n g R N A s " . S a i L a k s h m i S , S h i p r a A g r a w a l . N u c l e i c A c i d s R e s e a r c h 2 0 0 8 J a n u a r y ; 3 6 ( D a t a b a s e i s s u e ) : D 1 7 3 D 1 7 7 . [ P M C I D : P M C 2 2 3 8 9 4 3 ] . P M I D : 1 7 8 8 1 3 6 7
| 2008 | 26 |
|
| 3 |
frnadbhttp://www.ncrna.org/frnadb/ |
| fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences.Kin T, Yamada K, Terai G, Okida H, Yoshinari Y, Ono Y, Kojima A, Kimura Y, Komori T, Asai K.Nucleic Acids Res. 2007 Jan;35(Database issue):D145-8. Epub 2006 Nov 11.PMCID: PMC1669753. PMID:17099231
| 2007 | 35 |
URL not working as on 3 Jan 2015 |
| 4 |
deep basehttp://deepbase.sysu.edu.cn/index.php |
It is used for annotating and discovering small and long non coding rna from next generation sequencing data | Jian-Hua Yang, Peng Shao, Hui Zhou, Yue-Qin Chen, and Liang-Hu Qu.deepBase: a database for deeply annotating and mining deep sequencing data. Nucleic Acids Res. 2010 Jan;38(Database issue):D123-D130. Epub 2009 Dec 4. PMID: 22144203
| 2010 | 50 |
|
| 5 |
NONCODEhttp://www.noncode.org/ |
It gives information about the noncoding RNA and the sequences are confirmed manually using references.More than 80% of data is from the experimental data | NONCODE v2.0: decoding the non-coding.Nucleic Acids Research, 2008 , Vol. 36, Database issue D170-D172.PMCID:PMC2238973 PMID: 18000000
| 2008 | 64 |
|
| 6 |
ncRNAimprinthttp://rnaqueen.sysu.edu.cn/ncRNAimprint/ |
| ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. Zhang Y, GuanDG, Yang JH,Shao P,Zhou H,Qu RNA. 2010 Oct;16(10):1889-901. doi: 10.1261/rna.2226910. Epub 2010 Aug 26.
| 2010 | 87 |
URL not working as on 3 Jan 2015 |
| 7 |
piRNA predictorhttp://59.79.168.90/piRNA/index.php |
Used to predict pirna from the given sequences | A k-mer scheme to predict piRNAs and characterize locust piRNAs.Zhang Y, Wang X, Kang L. Bioinformatics. 2011 Mar 15;27(6):771-6. doi: 10.1093/bioinformatics/btr016. Epub 2011 Jan 11. PMCID: PMC3051322 PMID:21224287
| 2011 | 95 |
|
| 8 |
BlastRhttp://www.tcoffee.org/Projects/blastr/ |
Used to find homologous ncrna by searching in databases | BlastR--fast and accurate database searches for non-coding RNAs. Bussotti G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C. Nucleic Acids Res. 2011 May 30. PMCID: PMC3167602. PMID: 21624887
| 2011 | 96 |
|
| 9 |
pirna clusterhttp://www.uni-mainz.de/FB/Biologie/Anthropologie/492_ENG_HTML.php |
It can be used to download datasets for pirna clusters for different species (human,macaque,mouse,rat) | Rosenkranz D, Zischler H. proTRAC - a software for probabilistic piRNA cluster detection, visualization and analysis. BMC Bioinformatics 2012, 13:5 doi:10.1186/1471-2105-13-5.PMCID:PMC3293768. PMID: 22233380
| 2012 | 100 |
|
| 10 |
pseudomaphttp://pseudomap.mbc.nctu.edu.tw/php/ |
It is used to find TPG(Transcribed pseudogene) derived siRNA target interactions | pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes. Wen-Ling Chan, Wen-Kuang Yang, Hsien-Da Huang and Jan-Gowth Chang. Database (Oxford). 2013 Feb 8;2013:bat001. doi:10.1093/database/bat001.PMCID:PMC3567485. PMID: 23396300
| 2013 | 100 |
|
