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Created on: 09-Sep-2012   Last updated on: 09-Sep-2012  |  How to cite this?
Total resources - 22
A list of resources for phylogeny/taxonomy
Sravanthi Davuluri and Akhilesh Bajpai (Correspondence: Acharya KK, kshitish@ibab.ac.in)

S.NoResources
Short description*Rank by usage frequency Click to Edit / Add comments
1PHASE - a software package for PHylogenetics And Sequence Evolution
http://www.bioinf.man.ac.uk/resources/phase
49
2PHYLIP
http://evolution.genetics.washington.edu/phylip.html
Free package of programs for inferring phylogenies
49
3PAUP
http://paup.csit.fsu.edu
Tools for inferring and interpreting phylogenetic trees
82
4Phylodendron - Phylogenetic tree drawing
http://iubio.bio.indiana.edu/treeapp
96
5T-REX
http://www.trex.uqam.ca
96
6DIVEIN
http://indra.mullins.microbiol.washington.edu/DIVEIN/
Performs automated phylogenetic analysis of nucleotide and amino acid sequences
98
7ClustalW2 - Phylogeny
http://www.ebi.ac.uk/Tools/phylogeny/clustalw2_phylogeny
98
8iTOL - Interactive Tree Of Life
http://itol.embl.de/index.shtml
98
9MLTreemap - Maximum Linkage Tree map
http://mltreemap.org
Phylogenetic analysis of NGS data
98
10TreeGraph
http://treegraph.bioinfweb.info
Graphical editor for phylogenetic trees
98
11TNT - Tree Analysis Using New Technology
http://www.cladistics.org/downloads/webtnt.html
99
12phyloGif - Interactive Phylogenetic Tree Gif Maker
http://genome.csdb.cn/cgi-bin/phyloGif
100
13TreeTop - Phylogenetic Tree Prediction
http://www.genebee.msu.su/services/phtree_reduced.html
100
14TREE-PUZZLE
http://www.tree-puzzle.de
Maximum likelihood analysis for nucleotide, amino acid, and two-state data
100
15TreeMaker
http://www.agapow.net/software/treemaker
Interactive building and editing of a taxonomy and its conversion into a phylogeny
100
URL not working as on 9 Feb 2015
16TOPD/FMTS
http://genomes.urv.cat/topd
Calculate the differences between trees
100
17QuickTree
http://mobyle.pasteur.fr/cgi-bin/portal.py?#forms::quicktree
Rapid reconstruction of phylogenies by the Neighbor-Joining method
100
18Pplacer
http://matsen.fhcrc.org/pplacer
Query sequences on a fixed reference phylogenetic tree
100
19AMPHORA
http://openwetware.org/wiki/AMPHORA
Automated phylogenomic inference pipeline for bacterial sequences
100
20Phylogeny Analysis
http://www.phylogeny.fr/version2_cgi/phylogeny.cgi
100
21Phylogenetic Tree Generator
http://www.bioinfoproject.com/tools/phylogeny/index.htm
100
22ArboDraw
http://dunbrack.fccc.edu/ArboDraw
Builds and displays phylogenetic trees of protein and nucleic acid sequences
100
copyright © Dr. Kshitish Acharya K; all rights reserved

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