Created by
Share your knowledge / experiences
About Startbioinfo |
Other web-portals |
BdataA |
Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
SNP analysis
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
Simple lists
Carbohydrates
Gene ID conversion
Lipids
Long non-coding RNA
piRNA
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Mass spectrometry
Microarray data analysis
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and Pharmacodynamics
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Toxicology
Transcription factors and binding sites
Suggested Readings
Basic concepts
Broad reviews
Other reviews
Case studies
Comparison of resources
Intuitive browsing
Multi-level categories
Alphabetical list
Other reviews
Alternative splice form analysis
Alternative spliceA0variants of cytokines: making a list
PAID
DNA motif detection
Regulatory sequence analysis tools
A survey of DNA motif finding algorithms
Gene expression
Gene expression profiling by DNA microarray
Microarray analysis of gene expression
PAID
Gene expression profiling by Serial Analysis of Gene Expression (SAGE)
PAID
Gene expression profiling in asthma research
PAID
Gene expression arrays in cancer research
Application of SAGE in cancer research
PAID
Gene expression profiling in breast cancer research
MicroRNA
Role of microRNAs in cardiovascular biology and its therapeutic implications
Integrative computational analytical methods for microRNA target prediction
Role of microRNAs in cancer
Influence of viral microRNAs during replication and infection
Effect of microRNAs during transition phases of plant development
Role of microRNAs in drug response
Significance of microRNAs in mammalian stem cells
Difference between plant and animal microRNAs
Novel function of extracellular or circulating microRNAs as potential clinical biomarkers
Function of microRNAs in response to DNA damage and its application as sensitizers in cancer therapy
Involvement of microRNAs in physiological and pathological processes in the lung
Multiple sequence alignment
Recent trends in molecular phylogenetic analysis: where to next?
Upcoming challenges for multiple sequence alignment methods in the high-throughput era
Recent evolutions of multiple sequence alignment algorithms
Multiple sequence alignment: in pursuit of homologous DNA positions
Multiple sequence alignment as a guideline for protein engineering strategies
PAID
Integrating protein secondary structure prediction and multiple sequence alignment
PAID
Multiple sequence alignment in phylogenetic analysis
PAID
Multiple sequence alignment: algorithms and applications
PAID
Next generation sequencing
Role of NGS in cancer genomics
Challenges of sequencing human genomes
Applications of NGS in pharmacogenomics
Role of NGS in RNA-seq
Role of NGS in metagenomics
Review on cancer genome sequencing
Advantages of NGS versus the microarray in epigenetic research
Role of NGS in transcriptomics
Role of NGS in ChIP-seq
Review on discovering genetic polymorphisms in next generation sequencing data
Pathways
Next-generation mTOR inhibitors in clinical oncology: how pathway complexity informs therapeutic strategy
A review on selected biomarkers of DNA repair and related pathways
PAID
Computational databases, pathway and cheminformatics tools for tuberculosis drug discovery
Notch signaling pathway as a therapeutic target in breast cancer
Targeting Notch signaling pathway to overcome drug resistance for cancer therapy
Systems biology visualization tools for drug target discovery
PAID
Statistical methods for pathway analysis of genome-wide data for association with complex genetic traits
PAID
The nuclear factor NF-kappaB pathway in inflammation
Functional significance of zinc related pathways in Immune cells
PAID
Diverse pathways in ovarian cancer
PAID
Wnt signalling pathway in gastrointestinal cancers
PAID
Approaches for metabolic pathway analysis
PAID
Primer designing
Optimization of the annealing temperature for DNA amplification in vitro
Ligase chain reaction (LCR): overview and applications
Advances in PCR-based detection of mycoplasmas contaminating cell cultures
Maximizing sensitivity and specificity of PCR by pre-amplification heating
PAID
The degenerate primer design problem: theory and applications
Primer design in fluorescent DNA sequencing
Improved primer design for PCR-based, site-directed mutagenesis
Long and Accurate PCR [with trouble shooting]
PAID
Long-distance PCR
Applications of the polymerase chain reaction in environmental microbiology
Quantitative analysis of chromosome conformation capture assays (3C-qPCR)
Improved protocols for bisulfite sequencing and fragment analysis of methylated gDNA
A thermodynamic approach to PCR primer design
Optimization of mutation screening systems with temperature gradient gel electrophoresis and PCR
Integrating PCR theory and bioinformatics into a research-oriented primer design exercise
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
A new approach to primer design for the control of PCR bias in methylation studies
Primer design versus PCR bias in methylation independent PCR amplifications
Cloning, nucleotide sequence, and engineered expression of Thermus thermophilus DNA ligase, a homolog of Escherichia coli DNA ligase
Role of metal ions in catalysis by HIV integrase analyzed using a quantitative PCR disintegration assay
'Touchdown' PCR to circumvent spurious priming during gene amplification
PAID
Primer design versus PCR bias in methylation independent PCR amplifications
Promoter prediction
Rapidly evolving human promoter regions
PAID
A chromatin landmark and transcription initiation at most promoters in human cells
Sequence features that drive human promoter function and tissue specificity
A list of ubiquitous promoter products provided by Invivogen
The promoter of Alzheimer's disease amyloid A4 precursor gene
An abundance of bidirectional promoters in the human genome
Promoter prediction analysis on the whole human genome
PAID
Promoter prediction in the human genome
Protein structure prediction
Methods of protein structure prediction for drug design
Protein structure prediction based on PSSM
PAID
Protein structure prediction: a review
Livebench: benchmarking of protein structure prediction servers
De novo structure prediction by dynamic fragment assembly and conformational space annealing
Protein-protein interactions
Role for protein-protein interaction databases in human genetics
Computational reconstruction of protein-protein interaction networks: algorithms and issues
PAID
A review on models and algorithms for motif discovery in protein-protein interaction networks
Making the most of high-throughput protein-interaction data
Protein interaction networks in plants
PAID
Computational methods for protein-protein interaction and their application
PAID
A review on method of generation, reliability and biological significance of protein interaction data
Protein interaction networks in bacteria
PAID
Protein interaction networks from yeast to human
PAID
Protein interaction: same network, different hubs
PAID
Genome-wide studies of protein-protein interaction
PAID
Protein interaction maps for model organisms
PAID
Protein-protein interaction maps: a lead towards cellular functions
PAID
Use of protein-interaction maps to formulate biological questions
PAID
Building a protein interaction map: research in the post-genome era
PAID
Protein interaction methods-toward an endgame
PAID
Protein-protein interaction and enzymatic activity
PAID
The value of high quality protein-protein interaction networks for systems biology
PAID
Protein networks in disease
Protein-protein interactions in human disease
PAID
Interfering with protein-protein interactions: potential for cancer therapy
Prediction of protein-protein interaction networks
PAID
Protein interaction predictions from diverse sources
Prediction of protein-protein interaction networks
PAID
Evaluation of different domain-based methods in protein interaction prediction
PAID
Evolution of protein-protein interaction network
PAID
Inferring ancestral protein interaction networks
PAID
Evolution in protein interaction networks: co-evolution, rewiring and the role of duplication
PAID
Protein-protein interaction and quaternary structure
PAID
Analyzing protein interaction networks using structural information
PAID
Prediction of protein-protein interaction based on structure
PAID
Human protein-protein interaction networks and the value for drug discovery
PAID
Protein interaction-targeted drug discovery: evaluating critical issues
RNA structure prediction
RNA Structure Prediction
PAID
Why can't we predict RNA structure at atomic resolution?
Problems on RNA secondary structure prediction and design
RNA secondary structure prediction in soft computing framework
SNP analysis
The use of single nucleotide polymorphisms maps in pharmacogenomics
The use of single nucleotide polymorphisms in the isolation of common disease genes
PAID
Disclaimer
copyright © BdataA; all rights reserved
