| GatExplorer - Genomic and Transcriptomic Explorerhttp://bioinfow.dep.usal.es/xgate/principal.php |
| GATExplorer is an integrated database that combines genomic/transcriptomic visualization with nucleotide-level probe mapping. |
| | RisueF1o A, Fontanillo C, Dinger ME, De Las Rivas J. GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts,
exons and ncRNAs. BMC Bioinformatics. 2010 Apr 29;11:221. PubMed PMID: 20429936;
PubMed Central PMCID: PMC2875241.
|
| 2010 | 100 |
Gene information includes chromosome location and gene description.
Gene information includes chromosome location and gene description. |
| SpliceCenterhttp://projects.insilico.us/SpliceCenter/SpliceOverview.jsp |
| 1)Displays gene splice variants and probe target locations for expression microarray platforms.A0 2)Provides a summary of splice variant coverage of multiple genes for common microarray platforms. A03)Provides high-througput analysis of peptide sequences indicating the splice variants that do / do not include the peptide.A0 |
| | Ryan MC, Zeeberg BR, Caplen NJ, Cleland JA, Kahn AB, Liu H, Weinstein JN. SpliceCenter: a suite of web-based bioinformatic applications for evaluating the
impact of alternative splicing on RT-PCR, RNAi, microarray, and peptIDe-based studies. BMC Bioinformatics. 2008 Jul 18;9:313. PubMed PMID: 18638396; PubMed Central PMCID: PMC2491637.
|
| 2008 | 100 |
1) Gene information includes the chromosome number, strand, start, stop. 2) Peptide check displays the coding sequence for a peptide within splice variant of a gene. 3) Expression- check provides visualization of microarray expression data for a gene 4) Batch tools are also provided.
1) Gene information includes the chromosome number, strand, start, stop. 2) Peptide check displays the coding sequence for a peptide within splice variant of a gene. 3) Expression- check provides visualization of microarray expression data for a gene 4) Batch tools are also provided. |
| SpliceMinerhttp://projects.insilico.us/SpliceMiner/intro.jsp |
| SpliceMiner is a tool for querying Evidence Viewer Database (EVDB). SpliceMiner supports high-throughput batch queries and provides results in an easily parsable format. |
| | Kahn AB, Ryan MC, Liu H, Zeeberg BR, Jamison DC, Weinstein JN. SpliceMiner: a
high-throughput database implementation of the NCBI EvIDence Viewer for
microarray splice variant analysis. BMC Bioinformatics. 2007 Mar 5;8:75. PubMed
PMID: 17338820; PubMed Central PMCID: PMC1839109.
|
| 2007 | 100 |
1) Gene information includes chromosome number, start and end position, strand information. 2) Probe information includes Probe position.
1) Gene information includes chromosome number, start and end position, strand information. 2) Probe information includes Probe position. |
| X:Maphttp://xmap.picr.man.ac.uk |
| | Yates T, Okoniewski MJ, Miller CJ. X:Map: annotation and visualization of
genome structure for Affymetrix exon array analysis. Nucleic AcIDs Res. 2008
Jan;36(Database issue):D780-6. Epub 2007 Oct 11. PubMed PMID: 17932061; PubMed
Central PMCID: PMC2238884. |
| 2008 | 100 |
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