| Bacteriome.org - Bacterial protein interaction databasehttp://www.bacteriome.org |
| A web-resource that provides domain interactions along with PPIs. Provides protein interactions along with the complexes involved. Protein interactions specific to a biological process (e.g., apoptosis, cell cycle) can also be obtained. Provides interactions along with their structural relationships. |
| | Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Bacteriome.org--an integrated protein interaction database for E. coli. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16. PubMed PMID: 17942431; PubMed Central PMCID: PMC2238847. |
| 2007 | 100 |
|
| MiPPI - Microbial Protein-Protein Interactionshttp://mippi.ornl.gov |
| A resource specific to microbial (R. palustris & S. oneidensis) protein interactions derived from experimental data. |
| | Not available | 100 |
|
| MPIDB - Microbial Protein Interaction DataBasehttp://www.jcvi.org/mpidb |
| A database specific to bacterial PPIs. Gets similar protein interactions among species. |
| | Goll J, Rajagopala SV, Shiau SC, Wu H, Lamb BT, Uetz P. MPIDB: the microbial protein interaction database. Bioinformatics. 2008 Aug 1;24(15):1743-4. Epub 2008 Jun 13. PubMed PMID: 18556668; PubMed Central PMCID: PMC2638870. |
| 2008 | 100 |
|
| Plasmod-PPI/PPPI - Plasmodium Protein-Protein Interactionshttp://miaja.tic.udc.es/Bio-AIMS/PlasmodPPI.php |
| A database specific to Plasmodium PPIs. |
| | Yamilet Rodriguez-Soca, Cristian R. Munteanu, Julian Dorado, Juan RabuF1al, Alejandro Pazos and Humberto Gonz\E1lez-D\EDaz, Plasmod-PPI: a web-server predicting complex biopolymer targets in Plasmodium with entropy measures of protein-protein interactions, Polymer 51(1), 264-273 (2010) |
| 2010 | 100 |
|
| SPiDhttp://genome.jouy.inra.fr/spid |
| A database specific to Bacillus subtilis PPIs. Provides the interaction sites for a given protein. |
| | Hoebeke M, Chiapello H, Noirot P, Bessi\E8res P. SPiD: a subtilis protein interaction database. Bioinformatics. 2001 Dec;17(12):1209-12. PubMed PMID: 11751229.
|
| 2001 | 100 |
|
| YPD - Yeast Proteome Databasehttp://www.proteome.com/YPDhome.html |
| A manually curated database from PubMed for yeast proteome. Contains other information related to yeast proteins in additon to interaction. |
| | Garrels JI. YPD-A database for the proteins of Saccharomyces cerevisiae. Nucleic Acids Res. 1996 Jan 1;24(1):46-9. PubMed PMID: 8594598; PubMed Central PMCID: PMC145596. |
| 1996 | 100 |
|
