| vHoT http://dna.korea.ac.kr/vhot. |
| vHoT database predicts interspecies interactions between viral microRNA and host genomes. |
| | Kim H, Park S, Min H, Yoon S.vHoT: a database for predicting interspecies interactions between viral microRNA and host genomes.Arch Virol. 2012 Mar;157(3):497-501. doi: 10.1007/s00705-011-1181-y.PMID: 22160653 |
| 2012 | 50 |
|
| miRBasehttp://www.mirbase.org/ |
| A major microRNA repository comprising of microRNA sequences and annotation obtained from published literature wherein both precursor and mature sequences can be retrieved from the database. |
| | Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and
deep-sequencing data. Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. Epub
2010 Oct 30. PubMed PMID: 21037258
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for
microRNA genomics. Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub
2007 Nov 8. PubMed PMID: 17991681
|
| 2011 | 66 |
|
| Bi-targetinghttp://www.cs.bgu.ac.il/~vaksler/BiTargeting.htm |
| In silico tool designed to identify viral and human microRNAs that function together in regulating host gene expression. |
| | Veksler-Lublinsky I, Shemer-Avni Y, Kedem K, Ziv-Ukelson M. Gene bi-targeting
by viral and human miRNAs. BMC Bioinformatics. 2010 May 13;11:249. PubMed PMID:
20465802.
|
| 2010 | 100 |
To be validated
To be validated |
| miRNESThttp://mirnest.amu.edu.pl |
| Comprehensive database on animal, plant and virus microRNA including details on species that are of importance in medical and agricultural research. |
| | Szczesniak MW, Deorowicz S, Gapski J, Kaczynski L, Makalowska I. miRNEST database: an integrative approach in microRNA search and annotation. Nucleic Acids Res. 2012 Jan;40(Database issue):D198-204. Epub 2011 Dec 1. PubMed PMID: 22135287; PubMed Central PMCID: PMC3245016. |
| 2012 | 100 |
|
| RepTarhttp://reptar.ekmd.huji.ac.il |
| Database on genome-wide computed details of human and mouse microRNAs as well as of cellular targets of human and mouse viral microRNAs. |
| | Elefant N, Berger A, Shein H, Hofree M, Margalit H, Altuvia Y. RepTar: a
database of predicted cellular targets of host and viral miRNAs. Nucleic Acids
Res. 2011 Jan;39(Database issue):D188-94. Epub 2010 Dec 10. PubMed PMID:
21149264 |
| 2010 | 100 |
Dataset downloadable
Dataset downloadable |
| Vir-Mir-dbhttp://alk.ibms.sinica.edu.tw |
| Web based resource that allows a user to explore predicted viral microRNA hairpins and their corresponding host target gene. |
| | Li SC, Shiau CK, Lin WC. Vir-Mir db: prediction of viral microRNA candidate
hairpins. Nucleic Acids Res. 2008 Jan;36(Database issue):D184-9. Epub 2007 Aug
15. PubMed PMID: 17702763 |
| 2008 | 100 |
|
| ViTahttp://vita.mbc.nctu.edu.tw/ |
| Online resource comprising of virus data retrieved from databases such as miRBase, ICTV, VirGen, VBRC, and miRNAMap. Provides access to several tools to study microRNA and virus interaction. |
| | Hsu PW, Lin LZ, Hsu SD, Hsu JB, Huang HD. ViTa: prediction of host microRNAs
targets on viruses. Nucleic Acids Res. 2007 Jan;35(Database issue):D381-5. Epub
2006 Dec 5. PubMed PMID: 17148483 |
| 2007 | 100 |
|
| VMirURL not found |
| Computational tool to identify potential precursor microRNAs in viral genome. |
| | Grundhoff A, Sullivan CS, Ganem D. A combined computational and
microarray-based approach identifies novel microRNAs encoded by human
gamma-herpesviruses. RNA. 2006 May;12(5):733-50. Epub 2006 Mar 15. PubMed PMID:
16540699; PubMed Central PMCID: PMC1440911.
|
| 2006 | 100 |
Source code available from the authors upon request
Source code available from the authors upon request |
