miRBase | Tool name | miRBase |
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| URL | http://www.mirbase.org/ |
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| Important features | A major microRNA repository comprising of microRNA sequences and annotation obtained from published literature wherein both precursor and mature sequences can be retrieved from the database. |
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| Citations | Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and
deep-sequencing data. Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. Epub
2010 Oct 30. PubMed PMID: 21037258
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for
microRNA genomics. Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub
2007 Nov 8. PubMed PMID: 17991681
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| Year of publication | 2011 |
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| Rank by usage frequency | 66 |
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| Comments | |
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| Function | FIND microRNA: precursor, FIND microRNA: mature form, FIND microRNA: clusterwise, FIND microRNA: based on conservation, SPECIES: human, SPECIES: rat, SPECIES: mouse, SPECIES: zebrafish, SPECIES: chicken, SPECIES: worm, SPECIES: fly, SPECIES: virus, SPECIES: plant, SPECIES: miscellaneous, http://www.mirbase.org/, A major microRNA repository comprising of microRNA sequences and annotation obtained from published literature wherein both precursor and mature sequences can be retrieved from the database., Kozomara A- Griffiths-Jones S. miRBase: integrating microRNA annotation and
deep-sequencing data. Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. Epub
2010 Oct 30. PubMed PMID: 21037258
Griffiths-Jones S- Saini HK- van Dongen S- Enright AJ. miRBase: tools for
microRNA genomics. Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub
2007 Nov 8. PubMed PMID: 17991681
, 2011, 66, Online/ downloadable , 1.TAXA SUPPORTED INCLUDE: Chromalveolata- Metazoa- Mycetozoa- Viridiplantae- Viruses II. QUERY OR INPUT DATA: microRNA- sequence- chromosome location- coordinates- organism III. OUTPUT DATA: details on Precursor microRNA- Mature microRNA- their structure- accession ID- tissue expression etc., Identify potential precursor microRNAs in a given nucleotide sequence/ chromosome number- genomic coordinates/gene sequence etc., 1.1 FIND microRNA: precursor, Downloadable |
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