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A comparative account of protein-protein interaction resources, feature-validations and application-based categorizations : PPIs related to HIV
Resources Important features / utilities*CitationsYear of publicationRank by usage frequency Click to Edit / Add comments
MiMI - Michigan Molecular Interaction
Collects protein interaction data from multiple PPI databases. Provides interactions along with their functional associations.
Jayapandian M, Chapman A, Tarcea VG, Yu C, Elkiss A, Ianni A, Liu B, Nandi A, Santos C, Andrews P, Athey B, States D, Jagadish HV. Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Res. 2007 Jan;35(Database issue):D566-71. Epub 2006 Nov 27. PubMed PMID: 17130145; PubMed Central PMCID: PMC1716720.
MINT - Molecular INTeraction
A database that provides PPIs of experimental importance. It also identifies interactions among the given list of proteins. Provides options to curate data for the database.
Zanzoni A, Montecchi-Palazzi L, Quondam M, Ausiello G, Helmer-Citterich M, Cesareni G. MINT: a Molecular INTeraction database. FEBS Lett. 2002 Feb 20;513(1):135-40. Review. PubMed PMID: 11911893.
A database specific to viral-human protein interactions. Provides option for uploading or submitting PPI data.
Navratil V, de Chassey B, Meyniel L, Delmotte S, Gautier C, Andr\E9 P, Lotteau V, Rabourdin-Combe C. VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. Nucleic Acids Res. 2009 Jan;37(Database issue):D661-8. Epub 2008 Nov 4. PubMed PMID: 18984613; PubMed Central PMCID: PMC2686459.
A database of viral-host protein interactions. Provides option to build interactomes.
Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, Cusick ME, Cesareni G. VirusMINT: a viral protein interaction database. Nucleic Acids Res. 2009 Jan;37(Database issue):D669-73. Epub 2008 Oct 30. PubMed PMID: 18974184; PubMed Central PMCID: PMC2686573.
copyright © Dr. Kshitish Acharya K; all rights reserved

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