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A comparative account of protein-protein interaction resources, feature-validations and application-based categorizations : Viral-human PPIs
S.NoResources Important features / utilities*CitationsYear of publicationRank by usage frequency Click to Edit / Add comments
1 BIND/BOND - Biomolecular Object Network Databank
A database of protein-domain/ domain-domain interactions. Provides PPIs for a specific disease (e.g., prostate cancer). Provides protein-small molecule, protein-nucleic acid & genetic interactions. Provides the interactions along with the complexes and pathways involved. Also provides viral-human protein interactions (e.g., HIV-host protein interactions).
Bader GD, Donaldson I, Wolting C, Ouellette BF, Pawson T, Hogue CW. BIND--The Biomolecular Interaction Network Database. Nucleic Acids Res. 2001 Jan 1;29(1):242-5. PubMed PMID: 11125103; PubMed Central PMCID: PMC29820.
2 VirHostNet
A database specific to viral-human protein interactions. Provides option for uploading or submitting PPI data.
Navratil V, de Chassey B, Meyniel L, Delmotte S, Gautier C, Andr\E9 P, Lotteau V, Rabourdin-Combe C. VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. Nucleic Acids Res. 2009 Jan;37(Database issue):D661-8. Epub 2008 Nov 4. PubMed PMID: 18984613; PubMed Central PMCID: PMC2686459.
3 VirusMINT
A database of viral-host protein interactions. Provides option to build interactomes.
Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, Cusick ME, Cesareni G. VirusMINT: a viral protein interaction database. Nucleic Acids Res. 2009 Jan;37(Database issue):D669-73. Epub 2008 Oct 30. PubMed PMID: 18974184; PubMed Central PMCID: PMC2686573.
copyright © Dr. Kshitish Acharya K; all rights reserved

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