| miRBasehttp://www.mirbase.org/ |
| A major microRNA repository comprising of microRNA sequences and annotation obtained from published literature wherein both precursor and mature sequences can be retrieved from the database. |
| | Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and
deep-sequencing data. Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. Epub
2010 Oct 30. PubMed PMID: 21037258
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for
microRNA genomics. Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub
2007 Nov 8. PubMed PMID: 17991681
|
| 2011 | 66 |
|
| mESAdbhttp://konulab.fen.bilkent.edu.tr/mirna/ |
| The database primarily comprises mature microRNA sequences and their target data along with selected human, mouse and zebrafish expression data sets. doi: 10.1093/nar/gkq1256. PMID: 21177657 |
| | Kaya KD, KarakFClah G, Yakicier CM, Acar AC, Konu O.mESAdb: microRNA expression and sequence analysis database.Nucleic Acids Res. 2011 Jan;39(Database issue):D170-80. |
| 2011 | 100 |
|
| microTranspoGenehttp://transpogene.tau.ac.il/microTranspoGene.html |
| Database of microRNAs that are derived from transposable elements. |
| | Levy A, Sela N, Ast G. TranspoGene and microTranspoGene: transposed elements
influence on the transcriptome of seven vertebrates and invertebrates. Nucleic
Acids Res. 2008 Jan;36(Database issue):D47-52. Epub 2007 Nov 5. PubMed PMID:
17986453; PubMed Central PMCID: PMC2238949. |
| 2008 | 100 |
Dataset downloadable
Dataset downloadable |
| miRexhttp://miracle.igib.res.in/mirex/ |
| Web based resource which assists users to evaluate and study gene expression and also serves as an online repository for microRNA gene expression data. |
| | Bargaje R, Hariharan M, Scaria V, Pillai B. Consensus miRNA expression
profiles derived from interplatform normalization of microarray data. RNA. 2010
Jan;16(1):16-25. Epub 2009 Nov 30. PubMed PMID: 19948767; PubMed Central PMCID:
PMC2802026.
|
| 2010 | 100 |
|
| miRHrthttp://sysbio.suda.edu.cn/mirhrt/ |
| Database of microRNA regulating heart development.
|
| | Liu G, Ding M, Chen J, Huang J, Wang H, Jing Q, Shen B. Computational analysis
of microRNA function in heart development. Acta Biochim Biophys Sin (Shanghai).
2010 Sep;42(9):662-70. Epub 2010 Aug 17. PubMed PMID: 20716610.
|
| 2010 | 100 |
Dataset downloadable. On querying each section, no results were obtained and the following message was displayed:"Can't connect to MySQL server "(30-3-12, 7-4-12, 22-4-12, 24-4-12,29-6-12 , 18-7-12 ).
"Dataset downloadable. On querying each section, no results were obtained and the following message was displayed:""Can't connect to MySQL server ""(30-3-12, 7-4-12, 22-4-12, 24-4-12,29-6-12 , 18-7-12 )." |
| miRNESThttp://mirnest.amu.edu.pl |
| Comprehensive database on animal, plant and virus microRNA including details on species that are of importance in medical and agricultural research. |
| | Szczesniak MW, Deorowicz S, Gapski J, Kaczynski L, Makalowska I. miRNEST database: an integrative approach in microRNA search and annotation. Nucleic Acids Res. 2012 Jan;40(Database issue):D198-204. Epub 2011 Dec 1. PubMed PMID: 22135287; PubMed Central PMCID: PMC3245016. |
| 2012 | 100 |
|
| smiRNAdbhttp://www.mirz.unibas.ch/cloningprofiles/ |
| Online resource for expression information on small RNAs (mostly miRNAs) for human, mouse, rat, zebrafish, worm and fruitfly. |
| | Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice
A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S,
Fo\E0 R, Schliwka J, Fuchs U, Novosel A, MFCller RU, Schermer B, Bissels U, Inman J,
Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung
V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE,
Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ,
Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T. A mammalian
microRNA expression atlas based on small RNA library sequencing. Cell. 2007 Jun
29;129(7):1401-14. PubMed PMID: 17604727; PubMed Central PMCID: PMC2681231.
|
| 2007 | 100 |
Datasets downloadable
Datasets downloadable |
| Vir-Mir-dbhttp://alk.ibms.sinica.edu.tw |
| Web based resource that allows a user to explore predicted viral microRNA hairpins and their corresponding host target gene. |
| | Li SC, Shiau CK, Lin WC. Vir-Mir db: prediction of viral microRNA candidate
hairpins. Nucleic Acids Res. 2008 Jan;36(Database issue):D184-9. Epub 2007 Aug
15. PubMed PMID: 17702763 |
| 2008 | 100 |
|
