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Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
Pathways
Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
SNP analysis
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
Simple lists
Carbohydrates
Gene ID conversion
Lipids
Long non-coding RNA
piRNA
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
Preliminary lists
Antibodies
Biomarkers
Cell lines
Clinical trials
DNA/RNA structures
Disease-gene relationships
Enzymes
Functional analysis
Gene Ontology specific analysis
Gene/protein unified information
Genetics
Genomes and Genomics
Mass spectrometry
Microarray data analysis
Molecular docking
Nomenclature
Organelles
Orthologs
Pharmacokinetics and Pharmacodynamics
Phylogeny/Taxonomy
Protein domains
Protein localization
Protein-nucleic acid interactions
Secretome
Small molecules
Spectral analysis
Text-mining
Toxicology
Transcription factors and binding sites
Suggested Readings
Basic concepts
Broad reviews
Other reviews
Case studies
Comparison of resources
Intuitive browsing
Multi-level categories
Alphabetical list
Created on: 18-Dec-2011
Last updated on: 02-Nov-2012
How to cite this?
A comparative account of protein structure prediction resources, feature-validations and application-based categorizations
Nanda Pandey and Acharya KK* (*Correspondence: kshitish@ibab.ac.in)
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Ab initio structure prediction
Coiled coil structure prediction
Database
Domain Prediction
Disorder Prediction
Fold Prediction
Homology Modelling
Loop Modelling
Membrane Protein Prediction
Motifs/Pattern And Profile Detection
Post Translational Modifications Prediction
Protein Class/Family prediction
Secondary Structure Prediction
Server/Suite/Suite
Side Chain Modelling
Signal Peptide Prediction
Tertiary Structure Prediction
Threading/Remote Homology Prediction
Turn/Loop Prediction
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Please use the following to cite:
"Nanda Pandey and Acharya KK* (*Correspondence: kshitish@ibab.ac.in), A comparative account of protein structure prediction resources, feature-validations and application-based categorizations; In: Startbioinfo; 18 Dec 2011, /Protein structure prediction/"
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copyright © Dr. Kshitish Acharya K; all rights reserved
