1 | NeuroDNet http://bioschool.iitd.ac.in/NeuroDNet/ | A free to use resource for analyzing and constructing gene-networks for neurodegenerative diseases |
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2 | CAESAR http://visionlab.bio.unc.edu/caesar/ | Ranking genes as candidate genes for a complex trait using ontologies |
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3 | Oncomine https://www.oncomine.org | Gene expression patterns for several cancers |
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4 | S2G - Syndrome to Gene http://fohs.bgu.ac.il/s2g | A resource to find candidate gene for new and known syndromes, phenotypes, and related genes for a given set of genes |
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5 | DGP - Disease Gene Prediction http://www.cgg.ebi.ac.uk/services/dgp | Indication of involvement of genes in hereditary diseases using conservation, phylogenetic extent, protein length and paralogy patterns |
| | URL not working as on 17 Jan 2014 (confirmed on 3 Nov 2016) |
6 | NCG - Network of Cancer Genes http://bio.ieo.eu/ncg | A resource to analyze genes in relation to cancer, and to find out their duplicability, orthology, miRNA targets and network properties |
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7 | HuGE Navigator - A Navigator for Human Genome Epidemiology http://www.hugenavigator.net | A searchable knowledgebase with many integrated applications such as gene-disease associations, genetic markers, genotype prevalence and publication trends |
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8 | POCUS - Prioritization Of Candidate genes Using Statistics http://homepages.ed.ac.uk/csemple/pocus | Prediction of disease genes by over-representation of shared identifiers, and functional annotation |
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9 | PolySearch http://wishart.biology.ualberta.ca/polysearch | A text-mining tool for identifying associations among queries including diseases |
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10 | ProDiGe - Prioritization of disease genes http://cbio.ensmp.fr/~jvert/svn/prodige/html | Disease gene prioritization and functional annotation: disease associations, gene expression, protein-interactions, domains, transcriptional motifs and literature |
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11 | CancerResource http://bioinf-data.charite.de/cancerresource | Functional annotation focused on cancer: GO, pathways, gene expression, drugs, protein-interactions, structures, etc. |
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12 | GeneRanker http://cbioc.eas.asu.edu/generanker | Identify and annotate gene-disease relationships by mining the biomedical literature |
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13 | GeneWanderer http://compbio.charite.de/genewanderer | Identify probable disease/phenotype candidate genes on a chromosomal location by combining disease relationships and protein-interactions |
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14 | GenTrepid http://www.gentrepid.org | Gene prioritization based on pathways and disease relationships, including protein-interactions, domains and structures |
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15 | iCTNet - integrated Complex Traits Network http://flux.cs.queensu.ca/ictnet | Functional association networks: DNA/protein-interactions, pathways, diseases, drug-targets, gene-tissue, etc. |
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16 | PGMapper - Phenotype genotype mapper http://www.genediscovery.org/pgmapper | Matching genes to phenotypes |
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17 | PhenoPred http://www.phenopred.org | Identify novel gene-disease associations in humans |
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