| Tool name | agReg-SNPdb-Plants |
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| URL | https://azifi.tz.agrar.uni-goettingen.de/agreg-snpdb-plants/ |
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| Important features | Stores information on the rSNPs (regulatory SNPs) and their predicted effects on TF-binding for 13 agriculturally important plant species and subspecies. It can be queried via a web interface that allows users to search for SNP IDs, chromosomal regions, or genes. |
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| Citations | Klees S, Heinrich F, Schmitt AO, Gültas M. agReg-SNPdb-Plants: A Database of Regulatory SNPs for Agricultural Plant Species. Biology (Basel). 2022 Apr 29;11(5):684. doi: 10.3390/biology11050684. PMID: 35625412; PMCID: PMC9138521. |
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| Year of publication | 2022 |
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| Rank by usage frequency | 100 |
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| Comments | Online |
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| Function | |
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| Category | |
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| Applicable Species: Others | |
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| Application-based | Application-based |
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| NGS-data centric (sequencing info/analysis of NGS data) | |
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| Detection/ discovery/ identification | |
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| Functional effect | Functional effect |
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| Disease information | |
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| Population-specific information | |
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| Evolution-based information | |
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| General analysis/visualization/annotation of SNPs | General analysis/visualization/annotation of SNPs |
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| URL | https://azifi.tz.agrar.uni-goettingen.de/agreg-snpdb-plants/ |
|---|
| Important features | Stores information on the rSNPs (regulatory SNPs) and their predicted effects on TF-binding for 13 agriculturally important plant species and subspecies. It can be queried via a web interface that allows users to search for SNP IDs, chromosomal regions, or genes. |
|---|
| Citations | Klees S, Heinrich F, Schmitt AO, Gültas M. agReg-SNPdb-Plants: A Database of Regulatory SNPs for Agricultural Plant Species. Biology (Basel). 2022 Apr 29;11(5):684. doi: 10.3390/biology11050684. PMID: 35625412; PMCID: PMC9138521. |
|---|
| Year of publication | 2022 |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | Online |
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| Online | Online |
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| Downloadable | |
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| Online/Downloadable | |
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