Tool name | agReg-SNPdb-Plants |
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URL | https://azifi.tz.agrar.uni-goettingen.de/agreg-snpdb-plants/ |
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Important features | Stores information on the rSNPs (regulatory SNPs) and their predicted effects on TF-binding for 13 agriculturally important plant species and subspecies. It can be queried via a web interface that allows users to search for SNP IDs, chromosomal regions, or genes. |
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Citations | Klees S, Heinrich F, Schmitt AO, Gültas M. agReg-SNPdb-Plants: A Database of Regulatory SNPs for Agricultural Plant Species. Biology (Basel). 2022 Apr 29;11(5):684. doi: 10.3390/biology11050684. PMID: 35625412; PMCID: PMC9138521. |
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Year of publication | 2022 |
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Rank by usage frequency | 100 |
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Comments | Online |
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Function | |
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Category | |
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Applicable Species: Others | |
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Application-based | Application-based |
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NGS-data centric (sequencing info/analysis of NGS data) | |
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Detection/ discovery/ identification | |
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Functional effect | Functional effect |
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Disease information | |
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Population-specific information | |
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Evolution-based information | |
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General analysis/visualization/annotation of SNPs | General analysis/visualization/annotation of SNPs |
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URL | https://azifi.tz.agrar.uni-goettingen.de/agreg-snpdb-plants/ |
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Important features | Stores information on the rSNPs (regulatory SNPs) and their predicted effects on TF-binding for 13 agriculturally important plant species and subspecies. It can be queried via a web interface that allows users to search for SNP IDs, chromosomal regions, or genes. |
---|
Citations | Klees S, Heinrich F, Schmitt AO, Gültas M. agReg-SNPdb-Plants: A Database of Regulatory SNPs for Agricultural Plant Species. Biology (Basel). 2022 Apr 29;11(5):684. doi: 10.3390/biology11050684. PMID: 35625412; PMCID: PMC9138521. |
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Year of publication | 2022 |
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Rank by usage frequency | 100 |
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Comments | Online |
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Online | Online |
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Downloadable | |
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Online/Downloadable | |
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