| Tool name | Animal-SNPAtlas |
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| URL | http://gong_lab.hzau.edu.cn/Animal_SNPAtlas/ |
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| Important features | Catalogs 20 different types of animals and provides an important fundamental resource for the animal genomics, genetics and breeding community. Users can search the functional annotation of SNPs, perform online genotype imputation, explore and visualize LD information, browse variant information using the genome browser and download SNP datasets for each species. |
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| Citations | Gao Y, Jiang G, Yang W, Jin W, Gong J, Xu X, Niu X. Animal-SNPAtlas: a comprehensive SNP database for multiple animals. Nucleic Acids Res. 2023 Jan 6;51(D1):D816-D826. doi: 10.1093/nar/gkac954. PMID: 36300636; PMCID: PMC9825464. |
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| Year of publication | 2023 |
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| Rank by usage frequency | 100 |
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| Comments | Online |
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| Function | |
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| Category | |
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| Applicable Species: Others | Applicable Species: Others |
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| Application-based | Application-based |
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| NGS-data centric (sequencing info/analysis of NGS data) | |
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| Detection/ discovery/ identification | Detection/ discovery/ identification |
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| Functional effect | |
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| Disease information | |
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| Population-specific information | |
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| Evolution-based information | |
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| General analysis/visualization/annotation of SNPs | General analysis/visualization/annotation of SNPs |
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| URL | http://gong_lab.hzau.edu.cn/Animal_SNPAtlas/ |
|---|
| Important features | Catalogs 20 different types of animals and provides an important fundamental resource for the animal genomics, genetics and breeding community. Users can search the functional annotation of SNPs, perform online genotype imputation, explore and visualize LD information, browse variant information using the genome browser and download SNP datasets for each species. |
|---|
| Citations | Gao Y, Jiang G, Yang W, Jin W, Gong J, Xu X, Niu X. Animal-SNPAtlas: a comprehensive SNP database for multiple animals. Nucleic Acids Res. 2023 Jan 6;51(D1):D816-D826. doi: 10.1093/nar/gkac954. PMID: 36300636; PMCID: PMC9825464. |
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| Year of publication | 2023 |
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| Rank by usage frequency | 100 |
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| Comments | Online |
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| Online | Online |
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| Downloadable | |
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| Online/Downloadable | |
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