pssRNAMiner | Tool name | pssRNAMiner |
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| URL | http://bioinfo3.noble.org/pssRNAMiner/ |
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| Important features | A web server which identifies trans-acting siRNA clusters in plants, including their regulatory components. |
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| Citations | Dai X, Zhao PX. pssRNAMiner: a plant short small RNA regulatory cascade
analysis server. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W114-8. Epub
2008 May 12. PubMed PMID: 18474525; PubMed Central PMCID: PMC2447807.
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | Open access. |
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| Function | SPECIES: plant, BROAD SCOPE RESOURCES: non coding RNA, http://bioinfo3.noble.org/pssRNAMiner/, A web server which identifies trans-acting siRNA clusters in plants- including their regulatory components., Dai X- Zhao PX. pssRNAMiner: a plant short small RNA regulatory cascade
analysis server. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W114-8. Epub
2008 May 12. PubMed PMID: 18474525; PubMed Central PMCID: PMC2447807.
, 2008, 100, Open access., Online, I. SPECIES SUPPORTED INCLUDE: plant II. QUERY OR INPUT DATA: Upload or enter small RNA sequences in simple or FASTA format (size limit 8MB) 2. Choose a transcript or genomic library for mapping the submitted small RNAs.. 2.. Dataset: available for download. 3. Users can access the pre-run result by clicking the right most link..
III. OUTPUT DATA: details on small RNA clusters- matched transcript- transcript description etc. IV. ADDITIONAL INFORMATION: It is stated that the processing time may vary between 0.5 to 6 hours and is dependent on the small RNA library size and transcript library size. |
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