findMiRNA | Tool name | findMiRNA |
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| URL | http://sundarlab.ucdavis.edu/mirna/ |
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| Important features | Bioinfomatic tool that uses single genome method to predict microRNAs in Arabidopsis thaliana. |
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| Citations | Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan
V. Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res. 2005
Jan;15(1):78-91. PubMed PMID: 15632092; PubMed Central PMCID: PMC540280.
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| Year of publication | 2005 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | 1.1 FIND microRNA: precursor, FIND microRNA: mature form, FIND microRNA: specieswise, SPECIES: plant, http://sundarlab.ucdavis.edu/mirna/ , Bioinfomatic tool that uses single genome method to predict microRNAs in Arabidopsis thaliana. , Adai A- Johnson C- Mlotshwa S- Archer-Evans S- Manocha V- Vance V- Sundaresan
V. Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res. 2005
Jan;15(1):78-91. PubMed PMID: 15632092; PubMed Central PMCID: PMC540280.
, 2005, 100, Online/ downloadable , Linux, I. SPECIES SUPPORTED INCLUDE: plant II. QUERY OR INPUT DATA: Transcript ID- Intergenic or intron ID- Rfam precursor name- DNA/ RNA sequence (15 nucleotides) III. OUTPUT DATA: details on potential target transcript- intergenic regions- transcript- miRNA candidate- precursor candidate- RNAfold structure- result rank- miRNA Score- GC - 5'U- miRNA/target MFE- and precursor nMFE. , Analyze microRNA related to virus., 6.8 SPECIES: virus |
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