TarBase | Tool name | TarBase |
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| URL | 1. http://www.diana.pcbi.upenn.edu/tarbase 2. http://microrna.gr/tarbase |
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| Important features | Manually curated database of experimentally supported microRNA (miRNA) targets in several animal SPECIES: plants and viruses. |
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| Citations | Sethupathy P, Corda B, Hatzigeorgiou AG. TarBase: A comprehensive database of
experimentally supported animal microRNA targets. RNA. 2006 Feb;12(2):192-7. Epub
2005 Dec 22. PubMed PMID: 16373484. |
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| Year of publication | 2005 |
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| Rank by usage frequency | 95 |
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| Comments | |
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| Function | FIND TARGET: database, EXPERIMENTAL: microRNA data with evidence, SPECIES: plant, SPECIES: miscellaneous, 1. http://www.diana.pcbi.upenn.edu/tarbase 2. http://microrna.gr/tarbase, Manually curated database of experimentally supported microRNA (miRNA) targets in several animal SPECIES: plants and viruses., Sethupathy P- Corda B- Hatzigeorgiou AG. TarBase: A comprehensive database of
experimentally supported animal microRNA targets. RNA. 2006 Feb;12(2):192-7. Epub
2005 Dec 22. PubMed PMID: 16373484. , 2005, 95, Online/ downloadable , I. SPECIES SUPPORTED INCLUDE: animal- plant- virus II. QUERY OR INPUT DATA: Enter keyword: microRNA- gene III. OUTPUT DATA: details on microRNA target interactions- experimental validation methods and their results, Papadopoulos GL- Reczko M- Simossis VA- Sethupathy P- Hatzigeorgiou AG. The
database of experimentally supported targets: a functional update of TarBase.
Nucleic Acids Res. 2009 Jan;37(Database issue):D155-8. Epub 2008 Oct 27. PubMed
PMID: 18957447; PubMed Central PMCID: PMC2686456, Study regulation or analyze expression pattern of given data., 3.1 FUNCTIONAL ANALYSIS: regulation/ expression |
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