Magia | Tool name | Magia |
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| URL | http://gencomp.bio.unipd.it/magia/start/ |
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| Important features | Bioinformatic resource for comparative analysis of microRNA and target genes and study of gene expression profile. |
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| Citations | Sales G, Coppe A, Bisognin A, Biasiolo M, Bortoluzzi S, Romualdi C. MAGIA, a
web-based tool for miRNA and Genes Integrated Analysis. Nucleic Acids Res. 2010
Jul;38(Web Server issue):W352-9. Epub 2010 May 19. PubMed PMID: 20484379; PubMed
Central PMCID: PMC2896126.
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | MAGIA is freely available for academic users. |
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| Function | FIND TARGET: integrated tools, SPECIES: human, http://gencomp.bio.unipd.it/magia/start/, Bioinformatic resource for comparative analysis of microRNA and target genes and study of gene expression profile., Sales G- Coppe A- Bisognin A- Biasiolo M- Bortoluzzi S- Romualdi C. MAGIA- a
web-based tool for miRNA and Genes Integrated Analysis. Nucleic Acids Res. 2010
Jul;38(Web Server issue):W352-9. Epub 2010 May 19. PubMed PMID: 20484379; PubMed
Central PMCID: PMC2896126.
, 2010, 100, MAGIA is freely available for academic users., Online, I. SPECIES SUPPORTED INCLUDE: human II. QUERY OR INPUT DATA: 1. Select species 2. Input ID: Ensemble- Entrezgene- Ensemble transcripts- miRNA- RefSeq transcripts 3. Select prediction algorithm (miRanda- PITA and TargetScan) 4. Analysis: Select ID- choose predictor a. upload microRNAs and genes expression matrices b. choose a subset of row IDs III. OUTPUT DATA: Displayed under the following headings: 1. Summary results page: This page displays the network and top ranking 250 regulatory relationships and gives links to the files having details on all relationships 2. Gene-centered page 3. miRNA-centered page 4. Functional enrichment analysis 5. Cytoscape for miRNA-network visualization |
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