FirstEF - First Exon Finder | Tool name | FirstEF - First Exon Finder |
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| URL | http://rulai.cshl.edu/tools/FirstEF/ |
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| Important features | Identifies the first exon, i.e, 5' terminal exon and promoter. It also gives the rank of the first exon within the cluster. |
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| Citations | Davuluri RV. Application of FirstEF to find promoters and first exons in the human genome. Curr Protoc Bioinformatics. 2003 May;Chapter 4:Unit4.7. PubMed PMID: 18428702. |
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| Year of publication | 2003 |
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| Rank by usage frequency | 100 |
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| Comments | 1) Gives predictions on direct as well as complementary strand. 2) Gives serial number of predicted exon cluster. 3) Gives predicted Promoter of length 570 bp. 4) Gives a posteriori probability of promoter for a given window of 570 bp. 5) Gives posteriori probablity of exon for a given GT and promoter region. 6) Gives posteriori probability of donor for a given GT. 7)Gives Boundaries of CpG window of length 201. 8) Gives rank of first exon within a cluster. 9) Results can be obtained by e-mail. |
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| Function | Exon detail, Exon detail: number, Exon detail: start/end, Exon detail direct information, Identify potential promoters, Species, Finds alternative splicing in human |
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| Input file format | FASTA format sequence |
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| Output file format | Tabulated |
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| Limitation | |
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