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Suggested Readings
 
 
A compilation and categorization of alternative splicing resources

GeneSeqer

Tool nameGeneSeqer
URLhttp://deepc2.psi.iastate.edu/cgi-bin/gs.cgi
Important featuresIdentify potential exon/intron structure in pre-mRNA by splice site prediction and spliced alignment.
CitationsBrendel V, Xing L, Zhu W. Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5. PubMed PMID: 14764557.
Year of publication2004
Rank by usage frequency100
Comments1) Looks for the EST matches. 2) E-mail notification. 3) Specialized GeneSeqer server at PlantGDB is used to align plant sequences.
FunctionFinds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in chicken, Finds alternative splicing in Drosophila, Finds alternative splicing in other species
Category
Input file formatGenomic DNA sequence and cDNA/EST sequences in FASTA format
Output file format
Limitation

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