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A compilation and categorization of alternative splicing resources

GOOD - Gene Oriented Ortholog Databse

Tool nameGOOD - Gene Oriented Ortholog Databse
Important features
CitationsHo MR, Chen CH, Lin WC. Gene-oriented ortholog database: a functional comparison platform for orthologous loci. Database (Oxford). 2010;2010:baq002. Epub 2010 Feb 10. PubMed PMID: 20428317; PubMed Central PMCID: PMC2860896.
Year of publication2010
Rank by usage frequency100
Comments1) Gives chromosome number and strand information as gene information. 2) Only the number of transcripts are given,which are linked to homologene (ncbi). 3) Also annotations from gene ontology are mentioned (molecular function, biological process, cellular component). 4) Reference transcripts, processed transcription units, orthologous tables, gene ontology can be downloaded. 5) Gives the detail of the different transcripts pertaining to that gene.
FunctionExon detail: number, Gene Information, Finds alternative splicing in human, Finds alternative splicing in mouse, Finds alternative splicing in cow, Finds alternative splicing in other species
Input file formatGene name, NCBI mRNA accession number, NCBI protein accession number.
Output file format

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