Genomes and Genomics

Ensembl
http://www.ensembl.org

A web resource for genome assemblies, sequences and their annotations

GOLD - Genomes Online Database
http://www.genomesonline.org

A web resource for information on genome and metagenome sequencing projects, and their associated metadata

1000 Genomes - A Deep Catalog of Human Genetic Variation
http://www.1000genomes.org

Genomes of a large number of human population

FlyBase - A Database of Drosophila Genes & Genomes
http://flybase.org

A database and web portal for genetic and genomic information on the fruit fly Drosophila melanogaster and related fly species

MGI - Mouse Genome Informatics
http://www.informatics.jax.org

An international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data

HIV databases
http://www.hiv.lanl.gov

A database on HIV genetic sequences, immunological epitopes, drug resistance-associated mutations, and vaccine trials

JGI Genome Portal
http://genome.jgi-psf.org

A comprehensive genome portal for multiple organisms and species

IMG - Integrated Microbial Genomes
http://img.jgi.doe.gov

A comprehensive resource for annotation and analysis of genome and metagenome datasets

CMR - Comprehensive Microbial Resource
http://cmr.jcvi.org

A comprehensive microbial resource for information on all of the publicly available, complete prokaryotic genomes

CGD - Candida Genome Database
http://www.candidagenome.org

A resource for genomic sequence and gene and protein information for Candida albicans

GRAMENE
http://www.gramene.org

A comprehensive resource for comparative grass genomics

MaizeGDB - Maize Genetics and Genomics Database
http://www.maizegdb.org

A repository for maize sequence, phenotype, stock, genotypic and karyotypic variation, and chromosomal mapping data

Medicago truncatula - A model for legume research
http://www.medicago.org

A collection of Medicago truncatula related resources including genomes

BioCyc
http://biocyc.org

A collection of databases describing the genome and metabolic pathways of many organisms.

GDR - Genome Database for Rosaceae
http://www.rosaceae.org

A curated and integrated database for centralized access to Rosaceae genomics and genetics data with analysis tools

Animal Genome Size Database
http://www.genomesize.com

A comprehensive catalog of haploid genomes from various animal species

AspGD - Aspergillus Genome Database
http://www.aspgd.org

An online resource that contains genetic and molecular biological information about Aspergillus

Cucurbit Genomics Database
http://www.icugi.org

A resource for Cucurbit species, including sequence data and tools for analysis

CyanoBase
http://genome.kazusa.or.jp/cyanobase

A resource for sequences and annotation data on the structures of the cyanobacterial genomes

Dendrome - A Forest Tree Genome Database
http://dendrome.ucdavis.edu

A database for forest tree genome data and related information

dictyBase
http://dictybase.org/

A central resource for Dictyostelid genomics

GrainGenes - A Database for Triticeae and Avena
http://wheat.pw.usda.gov/GG2

A suite for the Triticeae and Oat research, including databases, tools, data files, etc.

Amborella Genome Database
http://www.amborella.org

A genomics resource of Amborella trichopoda

BDGP - Berkeley Drosophila Genome Project
http://www.bdgp.org

A consortium of the Drosophila Genome Center providing sequences, materials, methods, and software

CGD - Cacao Genome Database
http://www.cacaogenomedb.org

A database that contain annotated EST databases of cacao, maps and markers, all publicly available sequences and the raw and assembled output of the ongoing cacao genome sequencing project

EBI Genomes
http://www.ebi.ac.uk/genomes

A database from EBI for genomes of various organisms

FungiDB - Fungi Genomics Resources
http://fungidb.org

A comprehensive genomics and functional resource for fungal species

GeneDB
http://www.genedb.org

A comprehensive resource for the sequence and annotation data for several pathogens

MBGD - Microbial Genome Database
http://mbgd.genome.ad.jp

A database for comparative analysis of completely sequenced microbial genomes by ortholog identification, paralog clustering, motif analysis and gene order comparison

AGD - Ashbya Genome Database
http://agd.vital-it.ch

A genome/transcriptome database with gene annotation and microarray expression data from Ashbya gossypii and Saccharomyces cerevisiae.

100

Animal Genome Database
http://animal.dna.affrc.go.jp

A resource for swine (Sus scrofa) genomics

100

AphidBase
http://www.aphidbase.com

A database for Aphid genome

100

Avian Genomes
http://aviangenomes.org

A comprehensive functional genomics resource for the genome and transcriptome of avian species

100

BacMap Genome Atlas
http://wishart.biology.ualberta.ca/BacMap http://bacmap.wishartlab.com

An interactive database for bacterial genomes

100

BeeBase
http://hymenopteragenome.org/beebase

A comprehensive resource for sequence data for the bee research

100

BGD - Bovine Genome Database
http://bovinegenome.org

A resource with integrated tools for Bos taurus genome

100

BioBIKE
biobike.csbc.vcu.edu

A bioligical integrated knowledge environment, which provides information on genomic sequences, gene annotations, functional descriptions, formal categories and hierarchical groups of metabolic reactions with genes.

100

BROAD Institute Genome data
http://www.broadinstitute.org/scientific-community/data

Genomes for multiple organism and species

100

Burkholderia Genome Database
http://www.burkholderia.com

A resource for updated annotations and comparative analysis of Burkholderia genomes

100

Castor Bean Genome Database
http://castorbean.jcvi.org

A database for castor bean (Ricinus communis) genomics

100

Catfish Genome Database - cBARBEL
http://www.catfishgenome.org/cbarbel

A resource for genetics and genomics research of Ictalurid catfish

100

URL not working as on 14 Nov 2016 (confirmed on 23 Feb 2017)

CHO Genome - Chinese Hamster Genome Database
http://www.chogenome.org

A resource for CHO cell genomics

100

Citrus Genome Database
http://www.citrusgenomedb.org

A resource for Citrus genomics, genetics, breeding, and tools for analysis

100

coliBASE - a genome resource for the E. coli research community
http://www.xbase.ac.uk/colibase

A comprehensive resource for comparative bacterial genomics, with multiple genomes

100

CottonDB - Cotton Genome Database
http://www.cottondb.org

A database with genomic, genetic and taxonomic information for cotton

100

Website states that the database has been moved to a new server since October 2011 and is in preparation for its conversion to a new database- CottonGen

Cucumber Genome DataBase
http://cucumber.genomics.org.cn/page/cucumber/index.jsp

A database of Cucumber genome and related information

100

CYGD - Comprehensive Yeast Genome Database
http://mips.helmholtz-muenchen.de/genre/proj/yeast

A database that provides sequence information and functional annotations on individual genes and proteins of yeast

100

Eucalyptus camaldulensis Genome Database
http://www.kazusa.or.jp/eucaly

Genetic information, investigated by sequencing the genome and the cDNA

100

FGDB - Fusarium graminearum Genome Database
http://mips.helmholtz-muenchen.de/genre/proj/fusarium

A resource for information on filamentous fungus Fusarium graminearum genome molecular structure and functional network

100

GENOME 10K� - Unveiling animal diversity
http://genome10k.soe.ucsc.edu

A resource of DNA sequences representing the genomes of 10,000 vertebrate species

100

GenomeAtlas
http://www.cbs.dtu.dk/services/GenomeAtlas

A database for sequence data and bioinformatics results

100

Genomes Unzipped - public personal genomics
http://www.genomesunzipped.org

A blog that provides expert commentary on the personal genomics industry, including genomic data and browser

100

GenomeWeb - Lists of Genome Sites
http://www.biologie.uni-hamburg.de/b-online/library/genomeweb/GenomeWeb/prokaryote-gen-db.html

A collection of prokaryotic genome databases

100

GNN - Genome News Network
http://www.genomenewsnetwork.org

An online magazine that covers important developments in genomics research around the world

100

GOBASE - an organelle genome database
http://gobase.bcm.umontreal.ca

A organelle genome database that integrates diverse data related to mitochondria and chloroplasts

100

Heliconius Genome Project
http://www.butterflygenome.org

A web-portal for the Heliconius butterfly genome project

100

HGD - Hymenoptera Genome Database
http://hymenopteragenome.org

A database of the genomes of bees Apis mellifera, Bombus terrestris and B. impatiens, the parasitoid wasp Nasonia vitripennis, and few species of ants

100

Jatropha Genome Database
http://www.kazusa.or.jp/jatropha

A resource for genomics analysis of Jatropha

100

JGI Genome Channel
http://compbio.ornl.gov/channel

A resource with integrated tools for the microbial genomes sequenced by the Joint Genome Institute (JGI)

100

KEGG GENOME Database
http://www.genome.jp/kegg/genome.html

A collection of KEGG organisms with known complete genome sequences

100

MicrobesOnline
http://www.microbesonline.org

A resource for microbial comparative and functional genomics analysis, and includes genomes and expression data for various microbial species

100

Microbial Genomics
http://microbialgenomics.energy.gov/databases.shtml

A site providing web-based resources for microbial genomics

100

MicroScope - Microbial Genome Annotation & Analysis Platform
https://www.genoscope.cns.fr/agc/microscope

A resource for microbial genome annotation and functional analysis

100

MIPS - PlantsDB
http://mips.helmholtz-muenchen.de/plant/genomes.jsp

An integrated platform for comparative plant genome research

100

MITOMAP
http://www.mitomap.org/MITOMAP

A human mitochondrial genome database

100

miyakogusa.jp
http://www.kazusa.or.jp/lotus

A resource for structural features of the Lotus japonicus genome

100

Mouse Genomes Project
http://www.sanger.ac.uk/resources/mouse/genomes

Genomics data and related information for several mouse strains

100

MPGDB - Mycobacteriophage Genome DataBase
http://mpgdb.ibioinformatics.org/mpgdb.php

A resource that provides detailed information on genes and proteins of mycobacteriophages sequenced completely

100

MycoCosm - the fungal genomics resource
http://genome.jgi.doe.gov/programs/fungi

A comprehensive functional genomics portal for fungal species

100

NCBI Genome
http://www.ncbi.nlm.nih.gov/genome

A resource that organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations

100

NIG Mouse Genome Database
http://molossinus.lab.nig.ac.jp/msmdb

A mouse genome database from National Institute of Genetics

100

ParameciumDB
http://paramecium.cgm.cnrs-gif.fr

An integrated database and analysis platform for the Model Organism Paramecium tetraurelia

100

PlantGDB
http://www.plantgdb.org

A resource providing sequence data and custom EST assemblies (PUT) for various plant species as well as web tools and plant genome browsers

100

PlasmoDB - Plasmodium Genomics Resource
http://plasmodb.org/plasmo

A database of Plasmodium with information on annotated genomes, evidence of transcription, proteomics evidence etc. and tools for data analysis and visualization

100

PomBase
http://www.pombase.org

A database for Schizosaccharomyces pombe providing structural and functional sequence annotation and access to large-scale data sets

100

PopulusDB
http://www.populus.db.umu.se

A comprehensive resource for tree genomics

100

Pseudomonas Genome Database
http://www.pseudomonas.com

A resource for the Pseudomonas aeruginosa PAO1 reference strain's genome and comparative analyses of several related Pseudomonas species.

100

Pythium Genome Database
http://pythium.plantbiology.msu.edu

A resource for Phytopathogen (Pythium ultimum) genome

100

RCGDB - Roche Cancer Genome Database
http://rcgdb.bioinf.uni-sb.de/MutomeWeb

A cancer genome database from Roche

100

RGD - Rat Genome Database
http://rgd.mcw.edu

A database that provides information on rat genomes, diseases, phenotypes, models and also various genome analysis tools

100

RicBase - Rickettsia Genome Database
http://igs-server.cnrs-mrs.fr/mgdb/Rickettsia

A resource for genomes of different species of Rickettsia

100

Rice Genome Annotation Project Database
http://rice.plantbiology.msu.edu

A resource with integrated analysis tools for sequence and annotation data for the rice genome

100

SGD - Saccharomyces Genome Database
http://www.yeastgenome.org

A comprehensive resource that provides integrated biological information for the budding yeast Saccharomyces cerevisiae and various search and analysis tools

100

SGD - Sugi Genome Database
http://www.ffpri.affrc.go.jp/labs/cjgenome

A genome database of Cryptomeria japonica

100

Silencing Genomes
http://www.silencinggenomes.org

A resource on C. elegans gene silencing and related information

100

SilkDB - Silkworm Genome Database
http://silkworm.genomics.org.cn

A database that provides genomic data including functional annotation of genes, gene products and chromosomal mapping for the Bombyx mori

100

SmedGD - Schmidtea mediterranea Genome Database
http://smedgd.neuro.utah.edu

An integrated database for planarian genome, including predicted and annotated genes, ESTs, protein homologies, etc.

100

sol genomics network
http://solgenomics.net

A resource with integrated tools for Solanum and Nicotiana species genomes

100

SoyBase
http://www.soybase.org

An integrated genomics and molecular biology platform for Soybean research

100

Soybean GBrowse Database
http://soybeangenome.siu.edu

An integrative visualization of soybean genomic features

100

StellaBase - Nematostella vectensis Genomics Database
http://nematostella.bu.edu/stellabase

A genomics database for Nematostella vectensis

100

TAIR - The Arabidopsis Information Resource
http://www.arabidopsis.org

A resource for the model plant Arabidopsis thaliana, providing complete genome sequence along with other information such as gene structure, metabolism, gene expression, genome maps, genetic markers

100

TB Database - An integrated platform for tuberculosis research
http://genome.tbdb.org

A comprehensive database including genomic data related to tuberculosis, with integrated tools for the analysis

100

TCGA - The Cancer Genome Atlas
http://cancergenome.nih.gov

A resource and analysis platform for the genomic data generated by TCGA

100

TGD wiki - Tetrahymena Genome Database wiki
http://ciliate.org

A user-updatable database of Tetrahymena thermophila genome sequence

100

The SEED Viewer
http://seed-viewer.theseed.org

A resource for curated data with comparative analysis and annotation of multiple genomes