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Created on: 26-Oct-2012   Last updated on: 26-Oct-2012  |  How to cite this?
Total resources - 11
A list of resources for gene ontology specific analysis
Sravanthi Davuluri and Akhilesh Bajpai (Correspondence: Acharya KK, kshitish@ibab.ac.in)

S.NoResources
Short description*Rank by usage frequency Click to Edit / Add comments
1MOSAIC - GO network annotation and partition in Cytoscape
http://nrnb.org/tools/mosaic
A Cytoscape plugin for visualizing functional network based on GO terms, and mapping user data such as miRNA onto the network
1
2GORILLA - Gene Ontology enRIchment anaLysis and visuaLizAtion tool
http://cbl-gorilla.cs.technion.ac.il
GO enrichment analysis in ranked gene lists
32
3BiNGO - A Biological Network Gene Ontology tool
http://www.psb.ugent.be/cbd/papers/BiNGO/
A Cytoscape plugin for visualizing statistically over-represented GO categories
86
Website states that the current version- BINGO 3.0.3 is compatible with Cytoscape 3.0 and above (as on 8 Nov 2016)
4QuickGO
http://www.ebi.ac.uk/QuickGO
Quick browser for GO terms with many additional features such as Go filters and GO slim annotations and relationships
86
5GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
http://omicslab.genetics.ac.cn/GOEAST
Statistical GO analysis with graphical output and comparative analysis
88
6EasyGO - Gene Ontology enrichment analysis tool
http://bioinformatics.cau.edu.cn/easygo
Statistical GO term enrichment with graphical outputs for agronomical species
98
The updated version of EasyGO is available as- agriGO
7Catmap
http://bioinfo.thep.lu.se/catmap.html
Comparison of GO annotations and statistical ranking
100
8DynGO
http://biocreative.ifsm.umbc.edu/dyngo
Search and browse GO and its association databases
100
URL not working as on 21 Jan 2014 (confirmed on 13 Nov 2016)
9GOGrapher
https://projects.dbbe.musc.edu/trac/GOGrapher
GO analysis and network creation using GO terms
100
URL not working as on 16 Feb 2017
10Golorize
http://www.pasteur.fr/recherche/unites/Biolsys/Golorize
A Cytoscape plugin for a class-guided network visualization and over-representation analysis of GO categories
100
11PiNGO
http://www.psb.ugent.be/esb/PiNGO
A Cytoscape plugin for visualizing and analyzing biological networks of GO categories, including statistical and enrichment analysis
100
The current version of PiNGO is compatible with Cytoscape 2.8
 
Click here for more Gene Ontology analysis tools
copyright © Dr. Kshitish Acharya K; all rights reserved

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