| Maintained By |
European Bioinformatics Institute (EBI-EMBL) |
The Global Proteome Machine Organization |
Institute for Systems Biology |
University of Michigan |
National Center for Biotechnology Information (NCBI) |
| Status |
Working |
Working |
Working |
Not Working |
Not Working |
| Raw data |
Not available |
Not available |
Available |
Available |
Available |
| Processed and identified spectral data |
Not available |
Available |
Available |
Not available |
Available |
| Annotations provided |
Detailed |
Very basic |
Basic |
Very basic |
Detailed |
| Identified spectral information |
Available |
Not available |
Not available |
Not available |
Not available |
| Prototypic peptide (peptide sequence found only in that specific protein) |
Not available |
Available |
Available |
Not available |
Not available |
| Data submission procedure |
First need to convert into PRIDE Xml format and then through FTP it is uploaded |
Uploaded through Web interface |
FTP |
Web interface |
Upload FTP |
| Spectral line alignment |
Not available |
Available |
Not available |
Not available |
Not available |
| Present statistics (till 3 April 2013) |
Identified proteins = 12,215,318, Identified peptides = 69,344,804, distinct peptides = 6,163,762, total experiments = 27,643 |
Identified Proteins = 87,506,014, Identified peptides= 710,337,996, distinct proteins =1704358, distinct peptides = 4220490 |
Identified Proteins (human) = 214576, Identified Proteins(mouse)= 136945, Distinct peptides (human)=455577, Distinct peptides (mouse)=377249 |
Not available |
Not available |
| Query methods |
Experiment accession number, Identification accession number, Peptide sequence, Reference (PubMed ID/Title/Author), IPI, Ensembl Id, Names (Species,Tissue, Disease ), BTO |
Experiment accession number, Identification accession number, Peptide sequence, Ensembl Id, BTO, Keywords |
Ensembl protein Id, IPI ID, Refseq protein identifier, Unigene identifier, gene name, uniprot identifier, Peptide accession, Peptide sequence |
Not available |
Not available |
| Information about post translational modifications (PTM) |
Available |
Available |
Not available |
Not available |
Available |
| Type of information present |
Peak list, Derived peptide and Protein IDs, Associated metadata |
Metadata, protein and peptide information, Gene ontology display, Amino acid analysis |
Peptide and protein information, Sample peptide map |
Raw data |
Raw data, Peptide identification information, Biological and methodological metadata |
| Information about the primary database |
PubMed |
Tranche, PubMed, Peptide atlas |
Human Protein Atlas, Global Proteome Machine, PubMed |
PubMed, Peptide atlas |
PubMed, GenBank, Gene |
| Conversion of protein id's (based on relevant dbs) |
Can't be done |
Can be done |
Can't be done |
Can't be done |
Can't be find |
| Tools/softwares used to handle data-sets |
Pride inspector (Visualization tool) |
Not available |
Not available |
Not available |
Not available |
