| Tool name | Atlas-Indel2 |
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| URL | http://www.hgsc.bcm.tmc.edu/cascade-tech-software_atlas_indel2-ti.hgsc |
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| Important features | 1. Atlas-Indel2 is a suite of indel calling tools based on logistic regression models made up of pertinent variables sequencing data.
2. This branch of Atlas-Indel2 is trained for Illumina and SOLiD Exome Capture data.
3. It also needs SAMtools installed. |
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| Citations | |
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| Year of publication | Not available |
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| Rank by usage frequency | 100 |
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| Comments | Requires installation of SAMTools in the path. |
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| Function | Indel discovery |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | BAM file from GATK local realigner |
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| Output file format | VCF files |
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| Operating system | Unix |
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| Operating language | |
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| Platform | Illumina/Solexa and ABI SOLiD |
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| Maintained by | Baylor College of Medicine Human Genome Sequencing Center
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| Downloadable file format | |
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| Submission file format | |
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