Alta Cyclic | Tool name | Alta Cyclic |
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| URL | http://hannonlab.cshl.edu/Alta-Cyclic/main.html |
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| Important features | 1. It is used for accurate and long reads.
2. It provides large amount of useful reads after 78 cycles.
3. 78 base reads improved sequencing output.
4. It allows up to 9 mismatches. |
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| Citations | Erlich Y, Mitra PP, delaBastide M, McCombie WR, Hannon GJ. Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nat Methods. 2008 Aug;5(8):679-82. Epub 2008 Jul 6. PubMed PMID: 18604217; PubMed Central PMCID: PMC2978646. |
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Base calling |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | |
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| Output file format | 2bit format |
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| Operating system | Linux |
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| Operating language | Perl and C |
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| Platform | Illumina/Solexa |
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| Maintained by | Yaniv Erlich |
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| Downloadable file format | |
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| Submission file format | |
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