ANNOVAR | Tool name | ANNOVAR |
|---|
| URL | http://www.openbioinformatics.org/annovar/ |
|---|
| Important features | 1. ANNOVAR annotate genetic variants detected from diverse genomes including human genome hg18/ hg19, as well as mouse, worm, fly, yeast and many other organisms.
2. It can perform Gene-based, region-based and filter-based annotations. |
|---|
| Citations | Wang K, Li M, Hakonarson H.
ANNOVAR: functional annotation of genetic variants from high throughput sequencing data.
Nucleic Acids Res. 2010 Sep;38(16):e164. Epub 2010 Jul 3.
PMID:20601685. |
|---|
| Year of publication | 2010 |
|---|
| Rank by usage frequency | 50 |
|---|
| Comments | |
|---|
| Function | SNP discovery, Indel discovery |
|---|
| Category | Free, Downloadable |
|---|
| License | |
|---|
| Status | |
|---|
| Input file format | text-based input files, SAMTools pileup format, Illumina export format from GenomeStudio, SOLiD GFF genotype-calling format, Complete Genomics variant format, and VCF format. |
|---|
| Output file format | |
|---|
| Operating system | Linux |
|---|
| Operating language | Perl |
|---|
| Platform | |
|---|
| Maintained by | Ellen Purpus, director of OTT
|
|---|
| Downloadable file format | |
|---|
| Submission file format | |
|---|
| |
