AMOS - A Modular Open Source whole genome assembler | Tool name | AMOS - A Modular Open Source whole genome assembler |
|---|
| URL | http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS |
|---|
| Important features | 1. AMOS is a modular, open-source framework for genome assembly research and development, which provides integration between software modules through a centralized data store and a well defined API.
2. It has a comparative assembler, a program that can assemble a set of shotgun reads from an organism by mapping them to the finished sequence of a related organism, comparative assembler for short reads (Solexa, 454). |
|---|
| Citations | Treangen TJ, Sommer DD, Angly FE, Koren S, Pop M. Next Generation Sequence Assembly with AMOS. Curr Protoc Bioinformatics. 2011 Mar;Chapter 11:Unit11.8. PubMed PMID: 21400694. |
|---|
| Year of publication | 2011 |
|---|
| Rank by usage frequency | 98 |
|---|
| Comments | |
|---|
| Function | Reference assembler |
|---|
| Category | Free, Downloadable |
|---|
| License | Artistic |
|---|
| Status | |
|---|
| Input file format | AMOS message format |
|---|
| Output file format | |
|---|
| Operating system | Debian, Ubuntu, Fedora, RedHat, CentOS, Cygwin, Mac OS X |
|---|
| Operating language | C, Perl |
|---|
| Platform | Roche 454, Illumina/Solexa |
|---|
| Maintained by | |
|---|
| Downloadable file format | |
|---|
| Submission file format | |
|---|
| |
