AGILE - AliGnIng Long rEads | Tool name | AGILE - AliGnIng Long rEads |
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| URL | http://www.ece.northwestern.edu/~smi539/agile.html |
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| Important features | 1. It maps roche 454 reads with read length greater than 200.
2. The tool allows large no. of mismatches and insertions/ deletions.
3. It can handle large datasets.
4. It maps approximately 1.1 million reads of length 500 each to a reference human genome per hour. |
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| Citations | Misra S, Agrawal A, Liao WK, Choudhary A. Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing. Bioinformatics.2011 Jan 15;27(2):189-95. Epub 2010 Nov 18. PubMed PMID: 21088030. |
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| Year of publication | 2011 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Alignment/Mapping |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | FASTA |
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| Output file format | psl, pslx, axt, maf, sim4, wublast, blast, blast 8, blast 9
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| Operating system | Linux 64 bit |
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| Operating language | |
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| Platform | Roche 454 |
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| Maintained by | Northwestern University, Chicago
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| Downloadable file format | |
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| Submission file format | |
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