ABMapper | Tool name | ABMapper |
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| URL | http://abmapper.sourceforge.net/ |
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| Important features | 1. Maps RNA-Seq reads to target genome, considering possible multiple mapping locations and splice junctions.
2. Detects exonic alignment.
3. It has overlap parameter. |
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| Citations | Lou SK, Ni B, Lo LY, Tsui SK, Chan TF, Leung KS. ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. Bioinformatics. 2011 Feb 1;27(3):421-2. Epub 2010 Dec 17. PubMed PMID: 21169377;
PubMed Central PMCID: PMC3031031. |
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| Year of publication | 2011 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq alignment |
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| Category | Free, Downloadable |
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| License | GPL |
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| Status | |
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| Input file format | FASTA, FASTQ, SAM file generated by BWA |
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| Output file format | |
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| Operating system | Windows,Linux/Unix, Mac OS X |
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| Operating language | C++, Perl |
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| Platform | |
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| Maintained by | Hong Kong Bioinformatics Center
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| Downloadable file format | |
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| Submission file format | |
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