psRNATarget | Tool name | psRNATarget |
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| URL | http://plantgrn.noble.org/psRNATarget/ |
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| Important features | Web based resource for plant small RNA target study and for use in high-throughput analysis of next generation sequencing data. |
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| Citations | Dai X, Zhao PX. psRNATarget: a plant small RNA target analysis server. Nucleic
Acids Res. 2011 Jul;39(Web Server issue):W155-9. Epub 2011 May 27. PubMed PMID:
21622958; PubMed Central PMCID: PMC3125753.
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| Year of publication | 2011 |
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| Rank by usage frequency | 97 |
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| Comments | |
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| Function | EXPERIMENTAL data analysis, SPECIES: plant, http://plantgrn.noble.org/psRNATarget/, Web based resource for plant small RNA target study and for use in high-throughput analysis of next generation sequencing data., Dai X- Zhao PX. psRNATarget: a plant small RNA target analysis server. Nucleic
Acids Res. 2011 Jul;39(Web Server issue):W155-9. Epub 2011 May 27. PubMed PMID:
21622958; PubMed Central PMCID: PMC3125753.
, 2011, 97, Online, I. SPECIES SUPPORTED INCLUDE: plant II. QUERY OR INPUT DATA: Analysis:1. User-submitted small RNAs / preloaded transcripts:a. Upload or enter small RNA sequence(s) in FASTA format ( size limit: 20M). b. Select a preloaded transcript/genomic library for target search-
Other parameters (all have default values) 2. Preloaded small RNAs / user-submitted transcripts: Upload or enter small RNA sequence(s) in FASTA format size limit: 200M- Select published microRNAs (all or by species) (miRBase Release 16- September 2010)- remaining parameters are same as above. III. OUTPUT DATA: detailed list of microRNA target pairs along with provision for accessing online tools for batch downloading- key word searching and results sorting. |
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