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A comparative account of microRNA resources, feature-validations and application-based categorizations

mimiRNA

Tool namemimiRNA
URL1. http://mimirna.centenary.org.au/mep/formulaire.html 2. http://mimirna.centenary.org.au
Important featuresResource to explore expression status and functional association between microRNAs and their targets
CitationsRitchie W, Flamant S, Rasko JE. mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets. Bioinformatics. 2010 Jan 15;26(2):223-7. Epub 2009 Nov 17. PubMed PMID: 19933167.
Year of publication2010
Rank by usage frequency100
CommentsDataset downloadable
FunctionFUNCTIONAL ANALYSIS: regulation/ expression, DISEASE/ TISSUE SPECIFIC, 1. http://mimirna.centenary.org.au/mep/formulaire.html 2. http://mimirna.centenary.org.au, Resource to explore expression status and functional association between microRNAs and their targets, Ritchie W- Flamant S- Rasko JE. mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets. Bioinformatics. 2010 Jan 15;26(2):223-7. Epub 2009 Nov 17. PubMed PMID: 19933167. , 2010, 100, Dataset downloadable, Online, I. QUERY OR INPUT DATA: 1. Choose tissue or cell type to display the expression profile of all microRNAs 2. Select a microRNA to view its expression profile across all tissue and cell types 3. Choose a microRNA and gene in order to compare their expression profile across all tissue and cell types 4. Select a gene to find microRNAs targeting the gene- select p-value cut-off 5. Enter a microRNA to find its target(s) 6. Select two tissues or cell types to compare their microRNA expression profiles II. OUTPUT DATA: Graphical output of expression data is provided. Depending on the input the output generated can belong to any of the following: microRNA- targets- sequence- functions- and expression profile. III. ADDITIONAL INFORMATION: .Additional tools to determine multiple targets - common targets- provision to utilize experimental data for target prediction are also provided.
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