miRonTop Tool name | miRonTop |
---|
URL | http://www.microarray.fr:8080/miRonTop/index |
---|
Important features | A web-based tool that predicts the effect of microRNAs in a defined biological system based on results obtained from highthroughput sequencing or DNA microarrays. |
---|
Citations | Le Brigand K, Robbe-Sermesant K, Mari B, Barbry P. MiRonTop: mining microRNAs
targets across large scale gene expression studies. Bioinformatics. 2010 Dec
15;26(24):3131-2. Epub 2010 Oct 19. PubMed PMID: 20959382; PubMed Central PMCID:
PMC2995122 |
---|
Year of publication | 2010 |
---|
Rank by usage frequency | 100 |
---|
Comments | |
---|
Function | EXPERIMENTAL data analysis, http://www.microarray.fr:8080/miRonTop/index, A web-based tool that predicts the effect of microRNAs in a defined biological system based on results obtained from highthroughput sequencing or DNA microarrays. , Le Brigand K- Robbe-Sermesant K- Mari B- Barbry P. MiRonTop: mining microRNAs
targets across large scale gene expression studies. Bioinformatics. 2010 Dec
15;26(24):3131-2. Epub 2010 Oct 19. PubMed PMID: 20959382; PubMed Central PMCID:
PMC2995122, 2010, 100, Online, I. SPECIES SUPPORTED INCLUDE: Homo sapiens- Mus musculus- Rattus norvegicus II. QUERY OR INPUT DATA: 1. Upload gene top table (format: tab-delimited.txt file) 2. Choose species- prediction software- other parameters (expression signal etc) III. OUTPUT DATA: Processed information on microRNA targets- position of target sites- enrichment scores- functional annotations- graphical representation and summary of results. |
---|
Category | |
---|
| |