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A comparative account of microRNA resources, feature-validations and application-based categorizations

miRonTop

Tool namemiRonTop
URLhttp://www.microarray.fr:8080/miRonTop/index
Important featuresA web-based tool that predicts the effect of microRNAs in a defined biological system based on results obtained from highthroughput sequencing or DNA microarrays.
CitationsLe Brigand K, Robbe-Sermesant K, Mari B, Barbry P. MiRonTop: mining microRNAs targets across large scale gene expression studies. Bioinformatics. 2010 Dec 15;26(24):3131-2. Epub 2010 Oct 19. PubMed PMID: 20959382; PubMed Central PMCID: PMC2995122
Year of publication2010
Rank by usage frequency100
Comments
FunctionEXPERIMENTAL data analysis, http://www.microarray.fr:8080/miRonTop/index, A web-based tool that predicts the effect of microRNAs in a defined biological system based on results obtained from highthroughput sequencing or DNA microarrays. , Le Brigand K- Robbe-Sermesant K- Mari B- Barbry P. MiRonTop: mining microRNAs targets across large scale gene expression studies. Bioinformatics. 2010 Dec 15;26(24):3131-2. Epub 2010 Oct 19. PubMed PMID: 20959382; PubMed Central PMCID: PMC2995122, 2010, 100, Online, I. SPECIES SUPPORTED INCLUDE: Homo sapiens- Mus musculus- Rattus norvegicus II. QUERY OR INPUT DATA: 1. Upload gene top table (format: tab-delimited.txt file) 2. Choose species- prediction software- other parameters (expression signal etc) III. OUTPUT DATA: Processed information on microRNA targets- position of target sites- enrichment scores- functional annotations- graphical representation and summary of results.
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