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A comparative account of microRNA resources, feature-validations and application-based categorizations

miRDB

Tool namemiRDB
URLhttp://mirdb.org
Important featuresDatabase on predicted microRNA targets and functional annotations of especially mature microRNA in animals.
CitationsWang X. miRDB: a microRNA target prediction and functional annotation database with a wiki interface. RNA. 2008 Jun;14(6):1012-7. Epub 2008 Apr 21. PubMed PMID: 18426918
Year of publication2008
Rank by usage frequency97
CommentsDataset downloadable
FunctionFIND TARGET: database, FUNCTIONAL ANALYSIS: regulation/ expression, FUNCTIONAL ANALYSIS: pathways, SPECIES: rat, SPECIES: mouse, SPECIES: chicken, SPECIES: miscellaneous, http://mirdb.org, Database on predicted microRNA targets and functional annotations of especially mature microRNA in animals., Wang X. miRDB: a microRNA target prediction and functional annotation database with a wiki interface. RNA. 2008 Jun;14(6):1012-7. Epub 2008 Apr 21. PubMed PMID: 18426918 , 2008, 97, Dataset downloadable, Online, I. SPECIES SUPPORTED INCLUDE: human- mouse- rat- dog- chicken II. QUERY OR INPUT DATA: 1. Search by microRNA name (full mature miRNA name)- Gene symbol- Genbank accession- NCBI Gene ID 2. Search multiple microRNAs or genes. Select or enter own set of microRNAs or genes. 3. Specify the species if symbols are used and use space or comma to separate the entries. 4. Search Precompiled Pathways for miRNA Regulators III. OUTPUT DATA: details on predicted targets- target rank- target score- microRNA name- gene symbol and their description.- pathway analysis results IV. ADDITIONAL INFORMATION: It also has a wiki- editing interface that enables anyone to contribute to the process of functional annotation. , Identify the outcome of microRNA action- namely mRNA repression or mRNA degradation., 2.6 FIND TARGET: effect of action
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