miRCancer | Tool name | miRCancer |
|---|
| URL | 1. http://db.cs.ecu.edu/mirCancer/ 2. http://hdl.handle.net/10342/3195 |
|---|
| Important features | Database on microRNA expression data in human cancers derived from experimental results. |
|---|
| Citations | Boya Xie, Robert Hochberg, Qin Ding and Di Wu, "MIRSAT & MIRCDB: An Integrated microRNA Sequence Analysis Tool and a Cancer-associated microRNA Database", International Conference on Bioinformatics and Computational Biology, Honolulu, Hawaii, 2010, pp. 159-164. |
|---|
| Year of publication | 2010 |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | |
|---|
| Function | EXPERIMENTAL: microRNA data with evidence, DISEASE/ TISSUE SPECIFIC, SPECIES: human, 1. http://db.cs.ecu.edu/mirCancer/ 2. http://hdl.handle.net/10342/3195, Database on microRNA expression data in human cancers derived from experimental results. , Boya Xie- Robert Hochberg- Qin Ding and Di Wu- "MIRSAT & MIRCDB: An Integrated microRNA Sequence Analysis Tool and a Cancer-associated microRNA Database"- International Conference on Bioinformatics and Computational Biology- Honolulu- Hawaii- 2010- pp. 159-164., 2010, 100, Online, I. SPECIES SUPPORTED INCLUDE: African clawed frog (xla)- African malaria mosquito (aga)- Black snub-nosed monkey (pbi)- Black-handed spider monkey (age)- bony fishes(fru)- bony fishes(tni)- Bornean orangutan (ppy)- Cattle (bta)- chicken (gga)- Chimpanzee (ptr)- Chinese hamster (cgr)- Common woolly monkey (lla)- Dog (cfa)- Bomestic silk worm (bmo)- flatworms (sme)- flies (dps)- Fruit fly (dme)- Gray short-tailed opossum (mdo). Honey bee (ame)- House mouse (mmu)- Human (hsa)- Nematode (cel)- nematodes (cbr)- Norway rat (rno)- Pig (ssc)- Pig-tailed macaque (mne)- Pygmy chimpanzee (ppa)- Red-chested mustached tamarin (sla)- Rhesus monkey (mml)- Ring-tailed lemur (lca)- Sheep (oar)- Siamang (ssy)- Western clawed frog (xtr)- Western Gorilla (ggo)- Zebrafish (dre) II. QUERY OR INPUT DATA: 1. Search by microRNA name or cancer name 2. Sequence analysis: choose batch or individual entries- sequence configuration- analysis selection (cluster analysis or chi-square analysis) III. OUTPUT DATA: depends on the type of analysis chosen. Details on microRNA ID- family- cancer profile- reference (PubMed)- sequence analysis (clusters or chi square) IV. ADDITIONAL INFORMATION: miRCancer also includes a sequence analysis tool to assist researchers correlate functional relationships between microRNAs. A novel coding system- EICD-O- was also developed to annotate microRNA expressions in cancers.
|
|---|
| Category | |
|---|
| |
