SoMART | Tool name | SoMART |
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| URL | http://somart.ist.berkeley.edu/ |
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| Important features | Database on plant microRNA and trans acting small interfering RNA. |
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| Citations | Li F, Orban R, Baker B. SoMART: a web server for plant miRNA, tasiRNA and
target gene analysis. Plant J. 2012 Jan 24. doi:
10.1111/j.1365-313X.2012.04922.x. [Epub ahead of print] PubMed PMID: 22268718.
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| Year of publication | 2012 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SPECIES: plant, BROAD SCOPE RESOURCES: non coding RNA, http://somart.ist.berkeley.edu/, Database on plant microRNA and trans acting small interfering RNA., Li F- Orban R- Baker B. SoMART: a web server for plant miRNA- tasiRNA and
target gene analysis. Plant J. 2012 Jan 24. doi:
10.1111/j.1365-313X.2012.04922.x. [Epub ahead of print] PubMed PMID: 22268718.
, 2012, 100, Online, I. SPECIES SUPPORTED INCLUDE: plant II. QUERY OR INPUT DATA: Select the tool for analysis (Slicer detector- dRNA mapper- PreMIR detector- sRNA Mapper). For preMIR detector: Select from the given list of DNA databases (single or multiple) and enter or upload miRNA sequence in FASTA format III. OUTPUT DATA: presented in a downloadable format and provides a link to access the results. Output depends on the type of analysis chosen and in the case of PreMIR detector details on the precursor sequence and genetic loci are provided. |
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