EIMMO | Tool name | EIMMO |
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| URL | 1. http://piech.kaist.ac.kr/dynamod 2. http://biocondor6.kaist.ac.kr/dynamod/ |
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| Important features | Tool for microRNA target prediction and enrichment and depletion analysis in Gene Ontology terms. |
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| Citations | Gaidatzis D, van Nimwegen E, Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. Inference of miRNA targets
using evolutionary conservation and pathway analysis. BMC Bioinformatics. 2007
Mar 1;8:69. Erratum in: BMC Bioinformatics. 2007 Jul 12;8(1):248. PubMed PMID:
17331257 |
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| Year of publication | 2007 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SPECIES: human, SPECIES: worm, SPECIES: fly, 1. http://piech.kaist.ac.kr/dynamod 2. http://biocondor6.kaist.ac.kr/dynamod/, Tool for microRNA target prediction and enrichment and depletion analysis in Gene Ontology terms., Gaidatzis D- van Nimwegen E- Gaidatzis D- van Nimwegen E- Hausser J- Zavolan M. Inference of miRNA targets
using evolutionary conservation and pathway analysis. BMC Bioinformatics. 2007
Mar 1;8:69. Erratum in: BMC Bioinformatics. 2007 Jul 12;8(1):248. PubMed PMID:
17331257, 2007, 100, Online, I. SPECIES SUPPORTED INCLUDE: H. sapiens- D. melanogaster- D. rerio- M m.usculus- C. elegans II. QUERY OR INPUT DATA: 1. Select organism 2- Select mRNA a. all or upload data b. Choose from the given list based on expression profile - 3. Select miRNA from the given list III. OUTPUT DATA: 1. Target prediction summary for all selected miRNAs 2. Target prediction summary for all selected mRNAs
3. Enrichment and depletion analysis in Gene Ontology terms of compared predicted target set to whole mRNA set. , Analyze microRNAs related to fly., 6.7 SPECIES: fly |
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