A major microRNA repository comprising of microRNA sequences and annotation obtained from published literature wherein both precursor and mature sequences can be retrieved from the database.
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and
deep-sequencing data. Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. Epub
2010 Oct 30. PubMed PMID: 21037258
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for
microRNA genomics. Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub
2007 Nov 8. PubMed PMID: 17991681
Dweep H, Sticht C, Pandey P, Gretz N. miRWalk - Database: Prediction of
possible miRNA binding sites by "walking" the genes of three genomes. J Biomed
Inform. 2011 May 14. [Epub ahead of print] PubMed PMID: 21605702.
2011
94
The ARGONAUTE database was incorporated in miRWalk. The ARGONAUTE database was incorporated in miRWalk.
Database on predicted microRNA targets and functional annotations of especially mature microRNA in animals.
Wang X. miRDB: a microRNA target prediction and functional annotation database
with a wiki interface. RNA. 2008 Jun;14(6):1012-7. Epub 2008 Apr 21. PubMed PMID:
18426918
Provides information on mammalian microRNAs, their coding regions and regulatory aspects of their targeted genes.
Shahi P, Loukianiouk S, Bohne-Lang A, Kenzelmann M, KFCffer S, Maertens S, Eils
R, GrF6ne HJ, Gretz N, Brors B. Argonaute--a database for gene regulation by
mammalian microRNAs. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D115-8.
PubMed PMID: 16381827; PubMed Central PMCID: PMC1347455.
2006
100
The ARGONAUTE database has been incorporated in a new internet-based resource called miRWalk. The ARGONAUTE database has been incorporated in a new internet-based resource called miRWalk.
Genomic network of microRNAs in metazoan genomes that are beneficial in inferring microRNA regulatory functions. miRNAMap 2.0, was developed to retrieve and store details of experimentally verified microRNAs and experimentally verified microRNA target genes in human, mouse, rat, and other metazoan genomes.
Hsu PW, Huang HD, Hsu SD, Lin LZ, Tsou AP, Tseng CP, Stadler PF, Washietl S,
Hofacker IL. miRNAMap: genomic maps of microRNA genes and their target genes in
mammalian genomes. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9.
PubMed PMID: 16381831
Online resource for expression information on small RNAs (mostly miRNAs) for human, mouse, rat, zebrafish, worm and fruitfly.
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice
A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S,
Fo\E0 R, Schliwka J, Fuchs U, Novosel A, MFCller RU, Schermer B, Bissels U, Inman J,
Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung
V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE,
Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ,
Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T. A mammalian
microRNA expression atlas based on small RNA library sequencing. Cell. 2007 Jun
29;129(7):1401-14. PubMed PMID: 17604727; PubMed Central PMCID: PMC2681231.
Web based resource that allows a user to explore predicted viral microRNA hairpins and their corresponding host target gene.
Li SC, Shiau CK, Lin WC. Vir-Mir db: prediction of viral microRNA candidate
hairpins. Nucleic Acids Res. 2008 Jan;36(Database issue):D184-9. Epub 2007 Aug
15. PubMed PMID: 17702763
2008
100
Please use the following to cite: "Abinaya S and Acharya KK* (*Correspondence: kshitish@ibab.ac.in), A comparative account of primer designing resources, feature-validations and application-based categorizations : Junction primers; In: Startbioinfo; 10 Nov 2010, www.startbioinfo.com/junction-primers/"